From 96dbf26adfad7f43df3857d12afadf1c25778357 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 22 Jul 2022 15:29:08 +0200 Subject: Move logs into own directory to clean root --- test.log | 51 --------------------------------------------------- 1 file changed, 51 deletions(-) delete mode 100644 test.log (limited to 'test.log') diff --git a/test.log b/test.log deleted file mode 100644 index 266a566f..00000000 --- a/test.log +++ /dev/null @@ -1,51 +0,0 @@ -ℹ Loading mkin -Loading required package: parallel -ℹ Testing mkin -✔ | F W S OK | Context -✔ | 5 | AIC calculation -✔ | 5 | Analytical solutions for coupled models [3.2s] -✔ | 5 | Calculation of Akaike weights -✔ | 3 | Export dataset for reading into CAKE -✔ | 12 | Confidence intervals and p-values [1.0s] -✔ | 1 12 | Dimethenamid data from 2018 [31.6s] -──────────────────────────────────────────────────────────────────────────────── -Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data -Reason: Fitting this ODE model with saemix takes about 15 minutes on my system -──────────────────────────────────────────────────────────────────────────────── -✔ | 14 | Error model fitting [5.1s] -✔ | 5 | Time step normalisation -✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s] -✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s] -✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s] -✔ | 1 | Fitting the logistic model [0.2s] -✔ | 1 12 | Nonlinear mixed-effects models [0.2s] -──────────────────────────────────────────────────────────────────────────────── -Skip (test_mixed.R:68:3): saemix results are reproducible for biphasic fits -Reason: Fitting with saemix takes around 10 minutes when using deSolve -──────────────────────────────────────────────────────────────────────────────── -✔ | 3 | Test dataset classes mkinds and mkindsg -✔ | 10 | Special cases of mkinfit calls [0.4s] -✔ | 3 | mkinfit features [0.7s] -✔ | 8 | mkinmod model generation and printing [0.2s] -✔ | 3 | Model predictions with mkinpredict [0.4s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.7s] -✔ | 9 | Nonlinear mixed-effects models with nlme [8.3s] -✔ | 16 | Plotting [10.6s] -✔ | 4 | Residuals extracted from mkinfit models -✔ | 25 | saemix parent models [172.9s] -✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s] -✔ | 7 | Fitting the SFORB model [3.7s] -✔ | 1 | Summaries of old mkinfit objects -✔ | 5 | Summary [0.2s] -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s] -✔ | 9 | Hypothesis tests [7.8s] -✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s] - -══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 255.9 s - -── Skipped tests ────────────────────────────────────────────────────────────── -• Fitting this ODE model with saemix takes about 15 minutes on my system (1) -• Fitting with saemix takes around 10 minutes when using deSolve (1) - -[ FAIL 0 | WARN 0 | SKIP 2 | PASS 225 ] -- cgit v1.2.1