From ae8ba4b0e52aae9b317b0244e7162037bee9d27b Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 2 Dec 2020 07:53:37 +0100 Subject: Possibility to specify random effects structures The default is pdDiag again, as we often have a small number of datasets in degradation kinetics. --- test.log | 22 +++++++++------------- 1 file changed, 9 insertions(+), 13 deletions(-) (limited to 'test.log') diff --git a/test.log b/test.log index 84a8748e..c977d6a0 100644 --- a/test.log +++ b/test.log @@ -6,17 +6,17 @@ Testing mkin ✔ | 2 | Export dataset for reading into CAKE ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.9 s] ✔ | 4 | Calculation of FOCUS chi2 error levels [0.4 s] -✔ | 7 | Fitting the SFORB model [3.4 s] +✔ | 7 | Fitting the SFORB model [3.5 s] ✔ | 5 | Analytical solutions for coupled models [3.1 s] ✔ | 5 | Calculation of Akaike weights ✔ | 10 | Confidence intervals and p-values [1.0 s] -✔ | 14 | Error model fitting [4.4 s] +✔ | 14 | Error model fitting [4.7 s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s] ✔ | 1 | Fitting the logistic model [0.2 s] ✔ | 1 | Test dataset class mkinds used in gmkin ✔ | 1 | mkinfit features [0.3 s] ✔ | 12 | Special cases of mkinfit calls [0.7 s] -✔ | 8 | mkinmod model generation and printing [0.2 s] +✔ | 8 | mkinmod model generation and printing [0.3 s] ✔ | 3 | Model predictions with mkinpredict [0.4 s] ✔ | 14 2 | Evaluations according to 2015 NAFTA guidance [1.2 s] ──────────────────────────────────────────────────────────────────────────────── @@ -26,28 +26,24 @@ Reason: getRversion() < "4.1.0" is TRUE Skip (test_nafta.R:55:5): Test data from Appendix D are correctly evaluated Reason: getRversion() < "4.1.0" is TRUE ──────────────────────────────────────────────────────────────────────────────── -✖ | 7 1 | Nonlinear mixed-effects models [8.0 s] -──────────────────────────────────────────────────────────────────────────────── -FAILURE (test_nlme.R:90:3): nlme_function works correctly -`tmp <- update(m_nlme_mmkin)` did not produce any warnings. -──────────────────────────────────────────────────────────────────────────────── +✔ | 9 | Nonlinear mixed-effects models [8.0 s] ✔ | 0 1 | Plotting [0.7 s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_plot.R:25:3): Plotting mkinfit and mmkin objects is reproducible Reason: getRversion() < "4.1.0" is TRUE ──────────────────────────────────────────────────────────────────────────────── ✔ | 4 | Residuals extracted from mkinfit models -✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s] -✔ | 4 | Summary [0.1 s] +✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.7 s] +✔ | 4 | Summary [0.2 s] ✔ | 1 | Summaries of old mkinfit objects -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3 s] ✔ | 9 | Hypothesis tests [7.2 s] ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 38.9 s +Duration: 39.8 s ── Skipped tests ────────────────────────────────────────────────────────────── ● getRversion() < "4.1.0" is TRUE (3) -[ FAIL 1 | WARN 0 | SKIP 3 | PASS 144 ] +[ FAIL 0 | WARN 0 | SKIP 3 | PASS 146 ] -- cgit v1.2.1