From b5b446b718b15ccaae5b197e147fc1358f0f564e Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 6 Nov 2020 00:03:29 +0100 Subject: Fast analytical solutions for saemix, update.mmkin Also, use logit transformation for g and for solitary formation fractions, addressing #10. --- test.log | 25 ++++++++++++++++--------- 1 file changed, 16 insertions(+), 9 deletions(-) (limited to 'test.log') diff --git a/test.log b/test.log index b356bac5..318cc304 100644 --- a/test.log +++ b/test.log @@ -5,11 +5,11 @@ Testing mkin ✔ | 2 | Export dataset for reading into CAKE ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.9 s] ✔ | 4 | Calculation of FOCUS chi2 error levels [0.4 s] -✔ | 7 | Fitting the SFORB model [3.3 s] -✔ | 5 | Analytical solutions for coupled models [3.2 s] +✔ | 7 | Fitting the SFORB model [3.4 s] +✔ | 5 | Analytical solutions for coupled models [3.1 s] ✔ | 5 | Calculation of Akaike weights ✔ | 10 | Confidence intervals and p-values [1.0 s] -✔ | 14 | Error model fitting [4.1 s] +✔ | 14 | Error model fitting [4.3 s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s] ✔ | 1 | Fitting the logistic model [0.2 s] ✔ | 1 | Test dataset class mkinds used in gmkin @@ -25,7 +25,7 @@ Reason: getRversion() < "4.1.0" is TRUE test_nafta.R:53: skip: Test data from Appendix D are correctly evaluated Reason: getRversion() < "4.1.0" is TRUE ──────────────────────────────────────────────────────────────────────────────── -✔ | 9 | Nonlinear mixed-effects models [7.7 s] +✔ | 9 | Nonlinear mixed-effects models [7.9 s] ✔ | 0 1 | Plotting [0.7 s] ──────────────────────────────────────────────────────────────────────────────── test_plot.R:24: skip: Plotting mkinfit and mmkin objects is reproducible @@ -33,16 +33,23 @@ Reason: getRversion() < "4.1.0" is TRUE ──────────────────────────────────────────────────────────────────────────────── ✔ | 4 | Residuals extracted from mkinfit models ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s] -✔ | 4 | Summary [0.1 s] +✖ | 3 1 | Summary [0.1 s] +──────────────────────────────────────────────────────────────────────────────── +test_summary.R:17: failure: Summaries are reproducible +Results have changed from known value recorded in 'summary_DFOP_FOCUS_C.txt'. +1/82 mismatches +x[66]: "parent 2.661 4 5" +y[66]: "parent 2.495 3 6" +──────────────────────────────────────────────────────────────────────────────── ✔ | 1 | Summaries of old mkinfit objects ✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s] -✔ | 9 | Hypothesis tests [6.7 s] +✔ | 9 | Hypothesis tests [7.0 s] ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.5 s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 37.5 s +Duration: 38.1 s -OK: 146 -Failed: 0 +OK: 145 +Failed: 1 Warnings: 0 Skipped: 3 -- cgit v1.2.1