From bc3825ae2d12c18ea3d3caf17eb23c93fef180b8 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 8 Oct 2020 09:31:35 +0200 Subject: Fix issues for release --- test_dev.log | 55 ++++++++++++++++++++++++++++--------------------------- 1 file changed, 28 insertions(+), 27 deletions(-) (limited to 'test_dev.log') diff --git a/test_dev.log b/test_dev.log index b68a7e56..b5f8fd8e 100644 --- a/test_dev.log +++ b/test_dev.log @@ -1,36 +1,37 @@ Loading mkin Testing mkin ✔ | OK F W S | Context - ⠏ | 0 | AIC calculation ✔ | 4 | AIC calculation - ⠏ | 0 | Export dataset for reading into CAKE ✔ | 2 | Export dataset for reading into CAKE - ⠏ | 0 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ⠋ | 1 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ⠹ | 3 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ⠏ | 10 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8 s] - ⠏ | 0 | Calculation of FOCUS chi2 error levels ⠙ | 2 | Calculation of FOCUS chi2 error levels ⠸ | 4 | Calculation of FOCUS chi2 error levels ✔ | 4 | Calculation of FOCUS chi2 error levels [0.4 s] - ⠏ | 0 | Fitting the SFORB model ⠋ | 1 | Fitting the SFORB model ⠼ | 5 | Fitting the SFORB model ✔ | 7 | Fitting the SFORB model [3.0 s] - ⠏ | 0 | Analytical solutions for coupled models ⠋ | 1 | Analytical solutions for coupled models ⠙ | 2 | Analytical solutions for coupled models ⠹ | 3 | Analytical solutions for coupled models ⠸ | 4 | Analytical solutions for coupled models ⠼ | 5 | Analytical solutions for coupled models ✔ | 5 | Analytical solutions for coupled models [2.9 s] - ⠏ | 0 | Calculation of Akaike weights ✔ | 5 | Calculation of Akaike weights - ⠏ | 0 | Confidence intervals and p-values ⠙ | 2 | Confidence intervals and p-values ⠏ | 10 | Confidence intervals and p-values ✔ | 10 | Confidence intervals and p-values [0.9 s] - ⠏ | 0 | Error model fitting ⠹ | 3 | Error model fitting ⠸ | 4 | Error model fitting ⠼ | 5 | Error model fitting ⠴ | 6 | Error model fitting ⠧ | 8 | Error model fitting ⠏ | 10 | Error model fitting ⠙ | 12 | Error model fitting ⠸ | 13 1 | Error model fitting ⠸ | 13 1 | Error model fitting ⠸ | 13 1 | Error model fitting ⠸ | 13 1 | Error model fitting ⠸ | 14 | Error model fitting ✔ | 14 | Error model fitting [3.7 s] - ⠏ | 0 | Test fitting the decline of metabolites from their maximum ⠹ | 3 | Test fitting the decline of metabolites from their maximum ⠸ | 4 | Test fitting the decline of metabolites from their maximum ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.2 s] - ⠏ | 0 | Fitting the logistic model ⠋ | 1 | Fitting the logistic model ✔ | 1 | Fitting the logistic model [0.2 s] - ⠏ | 0 | Test dataset class mkinds used in gmkin ✔ | 1 | Test dataset class mkinds used in gmkin - ⠏ | 0 | Special cases of mkinfit calls ⠇ | 9 | Special cases of mkinfit calls ⠏ | 10 | Special cases of mkinfit calls ⠋ | 11 | Special cases of mkinfit calls ⠙ | 12 | Special cases of mkinfit calls ✔ | 12 | Special cases of mkinfit calls [0.6 s] - ⠏ | 0 | mkinmod model generation and printing ⠧ | 8 | mkinmod model generation and printing ✔ | 8 | mkinmod model generation and printing [0.2 s] - ⠏ | 0 | Model predictions with mkinpredict ⠋ | 1 | Model predictions with mkinpredict ✔ | 3 | Model predictions with mkinpredict [0.3 s] - ⠏ | 0 | Evaluations according to 2015 NAFTA guidance ⠙ | 2 | Evaluations according to 2015 NAFTA guidance ⠇ | 9 | Evaluations according to 2015 NAFTA guidance ⠏ | 10 | Evaluations according to 2015 NAFTA guidance ⠴ | 16 | Evaluations according to 2015 NAFTA guidance ✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.4 s] - ⠏ | 0 | Nonlinear mixed-effects models ⠋ | 1 | Nonlinear mixed-effects models ⠙ | 2 | Nonlinear mixed-effects models ⠸ | 4 | Nonlinear mixed-effects models ⠼ | 5 | Nonlinear mixed-effects models ⠴ | 6 | Nonlinear mixed-effects models ⠧ | 8 | Nonlinear mixed-effects models ⠇ | 9 | Nonlinear mixed-effects models ✔ | 9 | Nonlinear mixed-effects models [7.0 s] - ⠏ | 0 | Plotting ⠋ | 1 | Plotting ⠸ | 4 | Plotting ⠦ | 7 | Plotting ⠇ | 9 | Plotting ⠙ | 12 | Plotting ✔ | 14 | Plotting [1.3 s] - ⠏ | 0 | Residuals extracted from mkinfit models ✔ | 4 | Residuals extracted from mkinfit models - ⠏ | 0 | Complex test case from Schaefer et al. (2007) Piacenza paper ⠋ | 1 | Complex test case from Schaefer et al. (2007) Piacenza paper ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.3 s] - ⠏ | 0 | Summary ✔ | 4 | Summary - ⠏ | 0 | Summaries of old mkinfit objects ✔ | 1 | Summaries of old mkinfit objects - ⠏ | 0 | Results for synthetic data established in expertise for UBA (Ranke 2014) ⠋ | 1 | Results for synthetic data established in expertise for UBA (Ranke 2014) ⠹ | 3 | Results for synthetic data established in expertise for UBA (Ranke 2014) ✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.0 s] - ⠏ | 0 | Hypothesis tests ⠼ | 5 | Hypothesis tests ⠴ | 6 | Hypothesis tests ⠧ | 8 | Hypothesis tests ⠇ | 9 | Hypothesis tests ✔ | 9 | Hypothesis tests [7.1 s] - ⠏ | 0 | Calculation of maximum time weighted average concentrations (TWAs) ⠋ | 1 | Calculation of maximum time weighted average concentrations (TWAs) ⠙ | 2 | Calculation of maximum time weighted average concentrations (TWAs) ⠹ | 3 | Calculation of maximum time weighted average concentrations (TWAs) ⠸ | 4 | Calculation of maximum time weighted average concentrations (TWAs) ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s] +✔ | 4 | AIC calculation +✔ | 2 | Export dataset for reading into CAKE +✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8 s] +✔ | 4 | Calculation of FOCUS chi2 error levels [0.4 s] +✔ | 7 | Fitting the SFORB model [3.0 s] +✔ | 5 | Analytical solutions for coupled models [2.9 s] +✔ | 5 | Calculation of Akaike weights +✔ | 10 | Confidence intervals and p-values [0.9 s] +✔ | 14 | Error model fitting [3.4 s] +✔ | 4 | Test fitting the decline of metabolites from their maximum [0.2 s] +✔ | 1 | Fitting the logistic model [0.2 s] +✔ | 1 | Test dataset class mkinds used in gmkin +✔ | 1 | mkinfit features [0.2 s] +✔ | 12 | Special cases of mkinfit calls [0.6 s] +✔ | 8 | mkinmod model generation and printing [0.2 s] +✔ | 3 | Model predictions with mkinpredict [0.3 s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.3 s] +✔ | 9 | Nonlinear mixed-effects models [7.0 s] +✔ | 14 | Plotting [1.3 s] +✔ | 4 | Residuals extracted from mkinfit models +✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.3 s] +✔ | 4 | Summary +✔ | 1 | Summaries of old mkinfit objects +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.0 s] +✔ | 9 | Hypothesis tests [7.1 s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 35.7 s +Duration: 35.6 s -OK: 161 +OK: 162 Failed: 0 Warnings: 0 Skipped: 0 -- cgit v1.2.1