From 9c87bd68e2eb0342bc53d11fe2c3920a2e903d16 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 10 Dec 2020 10:14:07 +0100 Subject: Tried to find a fast test for deSolve in saemix But could not find one. --- tests/testthat/setup_script.R | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) (limited to 'tests/testthat/setup_script.R') diff --git a/tests/testthat/setup_script.R b/tests/testthat/setup_script.R index cfdc9277..fd9635d1 100644 --- a/tests/testthat/setup_script.R +++ b/tests/testthat/setup_script.R @@ -95,7 +95,7 @@ fit_obs_1 <- mkinfit(m_synth_SFO_lin, SFO_lin_a, error_model = "obs", quiet = TR fit_tc_1 <- mkinfit(m_synth_SFO_lin, SFO_lin_a, error_model = "tc", quiet = TRUE, error_model_algorithm = "threestep") -# Mixed models data and +# Mixed models data and fits sampling_times = c(0, 1, 3, 7, 14, 28, 60, 90, 120) n <- n_biphasic <- 15 log_sd <- 0.3 @@ -203,5 +203,4 @@ f_uba_mmkin <- mmkin(list("SFO-SFO" = sfo_sfo_uba, "DFOP-SFO" = dfop_sfo_uba), ds_uba, quiet = TRUE) f_uba_dfop_sfo_mixed <- mixed(f_uba_mmkin[2, ]) f_uba_sfo_sfo_saem <- saem(f_uba_mmkin["SFO-SFO", ], quiet = TRUE, transformations = "saemix") -#f_uba_sfo_sfo_saem <- saem(f_uba_mmkin["SFO-SFO", ], solution_type = "deSolve", quiet = TRUE) # currently fails f_uba_dfop_sfo_saem <- saem(f_uba_mmkin["DFOP-SFO", ], quiet = TRUE, transformations = "saemix") -- cgit v1.2.1