From f99bdd8697c3bfbd432a320774a4692fd0e1241a Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 6 Jan 2021 20:34:52 +0100 Subject: Make saemix and corresponding tests optional Address release critical check and test issues --- tests/testthat/summary_nlme_biphasic_s.txt | 42 +++++++++++++++--------------- 1 file changed, 21 insertions(+), 21 deletions(-) (limited to 'tests/testthat/summary_nlme_biphasic_s.txt') diff --git a/tests/testthat/summary_nlme_biphasic_s.txt b/tests/testthat/summary_nlme_biphasic_s.txt index f9171748..65aead62 100644 --- a/tests/testthat/summary_nlme_biphasic_s.txt +++ b/tests/testthat/summary_nlme_biphasic_s.txt @@ -17,15 +17,15 @@ Data: Model predictions using solution type analytical -Fitted in test time 0 s using 2 iterations +Fitted in test time 0 s using 3 iterations Variance model: Constant variance Mean of starting values for individual parameters: parent_0 log_k_m1 f_parent_qlogis log_k1 log_k2 - 100.70 -6.30 -0.08 -3.09 -3.95 + 100.70 -5.35 -0.08 -2.68 -4.37 g_qlogis - 0.03 + -0.33 Fixed degradation parameter values: value type @@ -34,40 +34,40 @@ m1_0 0 state Results: AIC BIC logLik - 2711 2766 -1343 + 2683 2738 -1329 Optimised, transformed parameters with symmetric confidence intervals: lower est. upper -parent_0 99.5 100.37 101.23 -log_k_m1 -6.5 -6.23 -5.94 -f_parent_qlogis -0.2 -0.08 0.08 -log_k1 -3.6 -3.22 -2.84 -log_k2 -4.5 -4.10 -3.68 -g_qlogis -0.4 -0.10 0.17 +parent_0 99.6 100.43 101.26 +log_k_m1 -5.5 -5.34 -5.18 +f_parent_qlogis -0.3 -0.08 0.09 +log_k1 -3.2 -2.90 -2.60 +log_k2 -4.6 -4.34 -4.07 +g_qlogis -0.5 -0.19 0.08 Correlation: prnt_0 lg_k_1 f_prn_ log_k1 log_k2 -log_k_m1 -0.185 -f_parent_qlogis -0.161 0.405 -log_k1 0.056 -0.014 -0.016 -log_k2 0.025 0.011 -0.004 0.026 -g_qlogis -0.032 -0.046 -0.012 -0.109 -0.103 +log_k_m1 -0.177 +f_parent_qlogis -0.164 0.385 +log_k1 0.108 -0.017 -0.025 +log_k2 0.036 0.054 0.008 0.096 +g_qlogis -0.068 -0.110 -0.030 -0.269 -0.267 Random effects: Formula: list(parent_0 ~ 1, log_k_m1 ~ 1, f_parent_qlogis ~ 1, log_k1 ~ 1, log_k2 ~ 1, g_qlogis ~ 1) Level: ds Structure: Diagonal parent_0 log_k_m1 f_parent_qlogis log_k1 log_k2 g_qlogis Residual -StdDev: 1 2e-04 0.3 0.7 0.8 0.3 3 +StdDev: 1 0.1 0.3 0.6 0.5 0.3 3 Backtransformed parameters with asymmetric confidence intervals: lower est. upper parent_0 1e+02 1e+02 1e+02 -k_m1 1e-03 2e-03 3e-03 +k_m1 4e-03 5e-03 6e-03 f_parent_to_m1 4e-01 5e-01 5e-01 -k1 3e-02 4e-02 6e-02 -k2 1e-02 2e-02 3e-02 +k1 4e-02 6e-02 7e-02 +k2 1e-02 1e-02 2e-02 g 4e-01 5e-01 5e-01 Resulting formation fractions: @@ -77,5 +77,5 @@ parent_sink 0.5 Estimated disappearance times: DT50 DT90 DT50back DT50_k1 DT50_k2 -parent 27 105 31 17 42 -m1 352 1171 NA NA NA +parent 26 131 39 13 53 +m1 144 479 NA NA NA -- cgit v1.2.1