From 0517ca6179d3c4bc35cc7edcfd5de3d98aa4fd64 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 9 Dec 2020 08:40:49 +0100 Subject: Some more tests --- tests/testthat/summary_saem_biphasic_s.txt | 77 ++++++++++++++++++++++++++++++ 1 file changed, 77 insertions(+) create mode 100644 tests/testthat/summary_saem_biphasic_s.txt (limited to 'tests/testthat/summary_saem_biphasic_s.txt') diff --git a/tests/testthat/summary_saem_biphasic_s.txt b/tests/testthat/summary_saem_biphasic_s.txt new file mode 100644 index 00000000..b5777ce1 --- /dev/null +++ b/tests/testthat/summary_saem_biphasic_s.txt @@ -0,0 +1,77 @@ +saemix version used for fitting: Dummy 0.0 for testing +mkin version used for pre-fitting: Dummy 0.0 for testing +R version used for fitting: Dummy R version for testing +Date of fit: Dummy date for testing +Date of summary: Dummy date for testing + +Equations: +d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * + time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time))) + * parent +d_m1/dt = + f_parent_to_m1 * ((k1 * g * exp(-k1 * time) + k2 * (1 - g) + * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) * + exp(-k2 * time))) * parent - k_m1 * m1 + +Data: +509 observations of 2 variable(s) grouped in 15 datasets + +Model predictions using solution type analytical + +Fitted in test time 0 s using 300, 100 iterations + +Variance model: Constant variance + +Mean of starting values for individual parameters: + parent_0 k_m1 f_parent_to_m1 k1 k2 + 1.0e+02 1.8e-03 4.8e-01 4.5e-02 1.9e-02 + g + 5.1e-01 + +Fixed degradation parameter values: +None + +Results: + +Likelihood computed by importance sampling + AIC BIC logLik + 2692 2702 -1333 + +Optimised parameters: + est. lower upper +parent_0 1.0e+02 99.3030 1.0e+02 +k_m1 2.2e-03 0.0016 2.8e-03 +f_parent_to_m1 4.9e-01 0.4477 5.3e-01 +k1 4.0e-02 0.0239 5.6e-02 +k2 1.5e-02 0.0085 2.2e-02 +g 5.0e-01 0.3805 6.2e-01 + +Correlation: + prnt_0 k_m1 f_p__1 k1 k2 +k_m1 -0.152 +f_parent_to_m1 -0.138 0.396 +k1 0.085 -0.036 -0.026 +k2 0.005 0.067 0.018 -0.043 +g -0.075 -0.113 -0.029 -0.248 -0.263 + +Random effects: + est. lower upper +SD.parent_0 1.23 0.39 2.07 +SD.k_m1 0.14 -0.48 0.75 +SD.f_parent_to_m1 0.28 0.17 0.39 +SD.k1 0.71 0.42 1.00 +SD.k2 0.78 0.47 1.09 +SD.g 0.27 -0.33 0.86 + +Variance model: + est. lower upper +a.1 2.7 2.6 2.9 + +Resulting formation fractions: + ff +parent_m1 0.49 +parent_sink 0.51 + +Estimated disappearance times: + DT50 DT90 DT50back DT50_k1 DT50_k2 +parent 27 110 33 17 46 +m1 318 1055 NA NA NA -- cgit v1.2.1