From f0ef23a7598e5d19648ae4edc2b74e0fba27a41c Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 3 Feb 2021 16:41:31 +0100 Subject: Prepare for v1.0.0 - Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest --- tests/testthat/summary_saem_biphasic_s.txt | 77 ------------------------------ 1 file changed, 77 deletions(-) delete mode 100644 tests/testthat/summary_saem_biphasic_s.txt (limited to 'tests/testthat/summary_saem_biphasic_s.txt') diff --git a/tests/testthat/summary_saem_biphasic_s.txt b/tests/testthat/summary_saem_biphasic_s.txt deleted file mode 100644 index b5777ce1..00000000 --- a/tests/testthat/summary_saem_biphasic_s.txt +++ /dev/null @@ -1,77 +0,0 @@ -saemix version used for fitting: Dummy 0.0 for testing -mkin version used for pre-fitting: Dummy 0.0 for testing -R version used for fitting: Dummy R version for testing -Date of fit: Dummy date for testing -Date of summary: Dummy date for testing - -Equations: -d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * - time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time))) - * parent -d_m1/dt = + f_parent_to_m1 * ((k1 * g * exp(-k1 * time) + k2 * (1 - g) - * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) * - exp(-k2 * time))) * parent - k_m1 * m1 - -Data: -509 observations of 2 variable(s) grouped in 15 datasets - -Model predictions using solution type analytical - -Fitted in test time 0 s using 300, 100 iterations - -Variance model: Constant variance - -Mean of starting values for individual parameters: - parent_0 k_m1 f_parent_to_m1 k1 k2 - 1.0e+02 1.8e-03 4.8e-01 4.5e-02 1.9e-02 - g - 5.1e-01 - -Fixed degradation parameter values: -None - -Results: - -Likelihood computed by importance sampling - AIC BIC logLik - 2692 2702 -1333 - -Optimised parameters: - est. lower upper -parent_0 1.0e+02 99.3030 1.0e+02 -k_m1 2.2e-03 0.0016 2.8e-03 -f_parent_to_m1 4.9e-01 0.4477 5.3e-01 -k1 4.0e-02 0.0239 5.6e-02 -k2 1.5e-02 0.0085 2.2e-02 -g 5.0e-01 0.3805 6.2e-01 - -Correlation: - prnt_0 k_m1 f_p__1 k1 k2 -k_m1 -0.152 -f_parent_to_m1 -0.138 0.396 -k1 0.085 -0.036 -0.026 -k2 0.005 0.067 0.018 -0.043 -g -0.075 -0.113 -0.029 -0.248 -0.263 - -Random effects: - est. lower upper -SD.parent_0 1.23 0.39 2.07 -SD.k_m1 0.14 -0.48 0.75 -SD.f_parent_to_m1 0.28 0.17 0.39 -SD.k1 0.71 0.42 1.00 -SD.k2 0.78 0.47 1.09 -SD.g 0.27 -0.33 0.86 - -Variance model: - est. lower upper -a.1 2.7 2.6 2.9 - -Resulting formation fractions: - ff -parent_m1 0.49 -parent_sink 0.51 - -Estimated disappearance times: - DT50 DT90 DT50back DT50_k1 DT50_k2 -parent 27 110 33 17 46 -m1 318 1055 NA NA NA -- cgit v1.2.1