From ae4ca17b89047052b35acee8e636ff8f31636c13 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Wed, 22 Apr 2020 16:09:53 +0200
Subject: Support SFORB with formation fractions

---
 tests/testthat/FOCUS_2006_D.csf      |  2 +-
 tests/testthat/test_SFORB.R          | 18 ++++++++++++++++++
 tests/testthat/test_mkinfit_errors.R |  3 ++-
 tests/testthat/test_mkinmod.R        |  4 ----
 4 files changed, 21 insertions(+), 6 deletions(-)

(limited to 'tests/testthat')

diff --git a/tests/testthat/FOCUS_2006_D.csf b/tests/testthat/FOCUS_2006_D.csf
index 81a4ed74..8faa19db 100644
--- a/tests/testthat/FOCUS_2006_D.csf
+++ b/tests/testthat/FOCUS_2006_D.csf
@@ -5,7 +5,7 @@ Description:
 MeasurementUnits: % AR
 TimeUnits: days
 Comments: Created using mkin::CAKE_export
-Date: 2020-04-20
+Date: 2020-04-22
 Optimiser: IRLS
 
 [Data]
diff --git a/tests/testthat/test_SFORB.R b/tests/testthat/test_SFORB.R
index b168a4ee..ad9881a8 100644
--- a/tests/testthat/test_SFORB.R
+++ b/tests/testthat/test_SFORB.R
@@ -9,4 +9,22 @@ test_that("Fitting the SFORB model is equivalent to fitting DFOP", {
   expect_match(s_sforb, "Estimated Eigenvalues of SFORB model\\(s\\):")
   expect_match(s_sforb, "parent_b1 parent_b2")
   expect_match(s_sforb, "0.45956 *0.01785")
+
+  DFOP_SFO <- mkinmod(parent = mkinsub("DFOP", "M1"),
+    M1 = mkinsub("SFO"),
+    use_of_ff = "max", quiet = TRUE)
+  SFORB_SFO <- mkinmod(parent = mkinsub("SFORB", "M1"),
+    M1 = mkinsub("SFO"),
+    use_of_ff = "max", quiet = TRUE)
+
+  SFORB_SFO$coefmat
+
+  f_dfop_sfo <- mkinfit(DFOP_SFO, DFOP_par_c, quiet = TRUE)
+  f_sforb_sfo <- mkinfit(SFORB_SFO, DFOP_par_c, quiet = TRUE)
+  f_sforb_sfo_eigen <- mkinfit(SFORB_SFO, DFOP_par_c, solution_type = "eigen", quiet = TRUE)
+
+  expect_equivalent(endpoints(f_sforb_sfo)$distimes, endpoints(f_dfop_sfo)$distimes,
+    tolerance = 1e-6)
+  expect_equivalent(endpoints(f_sforb_sfo_eigen)$distimes, endpoints(f_dfop_sfo)$distimes,
+    tolerance = 1e-6)
 })
diff --git a/tests/testthat/test_mkinfit_errors.R b/tests/testthat/test_mkinfit_errors.R
index 7987d291..940e0b2e 100644
--- a/tests/testthat/test_mkinfit_errors.R
+++ b/tests/testthat/test_mkinfit_errors.R
@@ -7,6 +7,7 @@ test_that("mkinfit stops to prevent and/or explain user errors", {
   # We remove zero observations from FOCUS_2006_D beforehand in
   # order to avoid another expect_warning in the code
   FOCUS_2006_D <- subset(FOCUS_2006_D, value != 0)
+
   # We get a warning if we use transform_fractions = FALSE with formation fractions
   # and an error if any pathway to sink is turned off as well
   expect_warning(
@@ -14,7 +15,7 @@ test_that("mkinfit stops to prevent and/or explain user errors", {
       mkinfit(SFO_SFO.ff.nosink, FOCUS_2006_D, transform_fractions = FALSE, quiet = TRUE),
       "turn off pathways to sink"
       ),
-    "sum of formation fractions")
+    "sum of formation fractions may exceed one")
 
   expect_error(mkinfit(SFO_SFO.ff, FOCUS_2006_D, transform_fractions = TRUE,
                        parms.ini = c(f_parent_to_m1 = 0.5), fixed_parms = "f_parent_to_m1", quiet = TRUE),
diff --git a/tests/testthat/test_mkinmod.R b/tests/testthat/test_mkinmod.R
index 1bdf094b..3178186a 100644
--- a/tests/testthat/test_mkinmod.R
+++ b/tests/testthat/test_mkinmod.R
@@ -20,10 +20,6 @@ test_that("mkinmod stops to prevent and/or explain user errors", {
   expect_error(mkinmod(parent = mkinsub("IORE", "m1"),
                        m1 = mkinsub("SFO"), use_of_ff = "min"),
                "only supported with formation fractions")
-
-  expect_error(mkinmod(parent = mkinsub("SFORB", "m1"),
-                       m1 = mkinsub("SFO"), use_of_ff = "max"),
-               "not supported")
 })
 
 test_that("Printing mkinmod models is reproducible", {
-- 
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