From 2890a954d8443e1aab04a5c5fa128574fa6cde87 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Wed, 10 Aug 2022 14:21:26 +0200
Subject: Naming of random effects for reduced parameter models

---
 tests/testthat/summary_hfit_sfo_tc.txt | 58 ++++++++++++++++++++++++++++++++++
 tests/testthat/test_mhmkin.R           | 11 +++++++
 2 files changed, 69 insertions(+)
 create mode 100644 tests/testthat/summary_hfit_sfo_tc.txt

(limited to 'tests')

diff --git a/tests/testthat/summary_hfit_sfo_tc.txt b/tests/testthat/summary_hfit_sfo_tc.txt
new file mode 100644
index 00000000..ad701cee
--- /dev/null
+++ b/tests/testthat/summary_hfit_sfo_tc.txt
@@ -0,0 +1,58 @@
+saemix version used for fitting:      Dummy 0.0 for testing 
+mkin version used for pre-fitting:  Dummy 0.0 for testing 
+R version used for fitting:         Dummy R version for testing 
+Date of fit:     Dummy date for testing 
+Date of summary: Dummy date for testing 
+
+Equations:
+d_parent/dt = - k_parent * parent
+
+Data:
+106 observations of 1 variable(s) grouped in 6 datasets
+
+Model predictions using solution type analytical 
+
+Fitted in test time 0 s
+Using 300, 100 iterations and 9 chains
+
+Variance model: Two-component variance function 
+
+Mean of starting values for individual parameters:
+    parent_0 log_k_parent 
+         101           -3 
+
+Fixed degradation parameter values:
+None
+
+Results:
+
+Likelihood computed by importance sampling
+  AIC BIC logLik
+  533 531   -261
+
+Optimised parameters:
+             est. lower upper
+parent_0      101   100   102
+log_k_parent   -3    -4    -3
+
+Correlation: 
+             pr_0
+log_k_parent 0.1 
+
+Random effects:
+                est. lower upper
+SD.log_k_parent  0.3   0.1   0.4
+
+Variance model:
+    est. lower upper
+a.1 0.91  0.64  1.17
+b.1 0.05  0.04  0.06
+
+Backtransformed parameters:
+          est. lower upper
+parent_0 1e+02 1e+02 1e+02
+k_parent 4e-02 3e-02 4e-02
+
+Estimated disappearance times:
+       DT50 DT90
+parent   19   64
diff --git a/tests/testthat/test_mhmkin.R b/tests/testthat/test_mhmkin.R
index e059948a..eced5583 100644
--- a/tests/testthat/test_mhmkin.R
+++ b/tests/testthat/test_mhmkin.R
@@ -29,4 +29,15 @@ test_that("Multiple hierarchical kinetic models can be fitted and diagnosed", {
   hfit_sfo_tc <- update(hfits[["SFO", "tc"]],
     covariance.model = diag(c(0, 1)))
   expect_equal(illparms(hfit_sfo_tc), character(0))
+
+  test_summary <- summary(hfit_sfo_tc)
+  test_summary$saemixversion <- "Dummy 0.0 for testing"
+  test_summary$mkinversion <- "Dummy 0.0 for testing"
+  test_summary$Rversion <- "Dummy R version for testing"
+  test_summary$date.fit <- "Dummy date for testing"
+  test_summary$date.summary <- "Dummy date for testing"
+  test_summary$time <- c(elapsed = "test time 0")
+
+  expect_known_output(print(test_summary, digits = 1),
+    "summary_hfit_sfo_tc.txt")
 })
-- 
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