From c705a294113ee74a8d408b8b51e4eb2b2822b3a7 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Sat, 15 Apr 2023 08:44:51 +0200
Subject: Move preprocessing of DMTA data to the test setup

---
 tests/testthat/setup_script.R | 12 ++++++++++++
 tests/testthat/test_dmta.R    | 11 -----------
 2 files changed, 12 insertions(+), 11 deletions(-)

(limited to 'tests')

diff --git a/tests/testthat/setup_script.R b/tests/testthat/setup_script.R
index 4e2f76ab..b2147fbe 100644
--- a/tests/testthat/setup_script.R
+++ b/tests/testthat/setup_script.R
@@ -110,3 +110,15 @@ dfop_saem_1 <- saem(mmkin_dfop_1, quiet = TRUE, transformations = "mkin",
   no_random_effect = c("parent_0", "g_qlogis"))
 
 parallel::stopCluster(cl)
+
+# Preprocess dimethenamid data
+dmta_ds <- lapply(1:7, function(i) {
+  ds_i <- dimethenamid_2018$ds[[i]]$data
+  ds_i[ds_i$name == "DMTAP", "name"] <-  "DMTA"
+  ds_i$time <- ds_i$time * dimethenamid_2018$f_time_norm[i]
+  ds_i
+})
+names(dmta_ds) <- sapply(dimethenamid_2018$ds, function(ds) ds$title)
+dmta_ds[["Elliot"]] <- rbind(dmta_ds[["Elliot 1"]], dmta_ds[["Elliot 2"]])
+dmta_ds[["Elliot 1"]] <- dmta_ds[["Elliot 2"]] <- NULL
+
diff --git a/tests/testthat/test_dmta.R b/tests/testthat/test_dmta.R
index 825c6e80..cd6de341 100644
--- a/tests/testthat/test_dmta.R
+++ b/tests/testthat/test_dmta.R
@@ -1,16 +1,5 @@
 context("Dimethenamid data from 2018")
 
-# Data
-dmta_ds <- lapply(1:7, function(i) {
-  ds_i <- dimethenamid_2018$ds[[i]]$data
-  ds_i[ds_i$name == "DMTAP", "name"] <-  "DMTA"
-  ds_i$time <- ds_i$time * dimethenamid_2018$f_time_norm[i]
-  ds_i
-})
-names(dmta_ds) <- sapply(dimethenamid_2018$ds, function(ds) ds$title)
-dmta_ds[["Elliot"]] <- rbind(dmta_ds[["Elliot 1"]], dmta_ds[["Elliot 2"]])
-dmta_ds[["Elliot 1"]] <- dmta_ds[["Elliot 2"]] <- NULL
-
 test_that("Different backends get consistent results for DFOP tc, dimethenamid data", {
 
   skip_on_cran() # Time constraints
-- 
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