From 19997986f7ee5b6274c9a06796b97a5610c4f888 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 26 Jun 2015 14:52:22 +0200 Subject: Pass R CMD check --as-cran, vignette rebuild --- vignettes/FOCUS_D.html | 23 ++++++++++++++--------- 1 file changed, 14 insertions(+), 9 deletions(-) (limited to 'vignettes/FOCUS_D.html') diff --git a/vignettes/FOCUS_D.html b/vignettes/FOCUS_D.html index 01d5d4f3..e8ab70de 100644 --- a/vignettes/FOCUS_D.html +++ b/vignettes/FOCUS_D.html @@ -10,7 +10,7 @@ - + Example evaluation of FOCUS Example Dataset D @@ -64,13 +64,18 @@ img {

This is just a very simple vignette showing how to fit a degradation model for a parent compound with one transformation product using mkin. After loading the library we look a the data. We have observed concentrations in the column named value at the times specified in column time for the two observed variables named parent and m1.

-
library("mkin")
-print(FOCUS_2006_D)
+
library("mkin")
+
## Loading required package: minpack.lm
+## Loading required package: rootSolve
+## Loading required package: inline
+## Loading required package: methods
+## Loading required package: parallel
+
print(FOCUS_2006_D)
##      name time  value
 ## 1  parent    0  99.46
 ## 2  parent    0 102.04
@@ -132,13 +137,13 @@ print(FOCUS_2006_D)

Confidence intervals for the parameter estimates are obtained using the mkinparplot function.

mkinparplot(fit)
-

+

A comprehensive report of the results is obtained using the summary method for mkinfit objects.

summary(fit)
-
## mkin version:    0.9.38 
+
## mkin version:    0.9.39 
 ## R version:       3.2.1 
-## Date of fit:     Tue Jun 23 15:18:13 2015 
-## Date of summary: Tue Jun 23 15:18:14 2015 
+## Date of fit:     Fri Jun 26 14:41:39 2015 
+## Date of summary: Fri Jun 26 14:41:40 2015 
 ## 
 ## Equations:
 ## d_parent = - k_parent_sink * parent - k_parent_m1 * parent
@@ -146,7 +151,7 @@ print(FOCUS_2006_D)

 ## 
 ## Model predictions using solution type deSolve 
 ## 
-## Fitted with method Port using 153 model solutions performed in 0.749 s
+## Fitted with method Port using 153 model solutions performed in 0.629 s
 ## 
 ## Weighting: none
 ## 
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