From bc3825ae2d12c18ea3d3caf17eb23c93fef180b8 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 8 Oct 2020 09:31:35 +0200 Subject: Fix issues for release --- vignettes/FOCUS_D.html | 19 +++++++++++++------ 1 file changed, 13 insertions(+), 6 deletions(-) (limited to 'vignettes/FOCUS_D.html') diff --git a/vignettes/FOCUS_D.html b/vignettes/FOCUS_D.html index 16bc2084..ea6acdbe 100644 --- a/vignettes/FOCUS_D.html +++ b/vignettes/FOCUS_D.html @@ -11,7 +11,7 @@ - + Example evaluation of FOCUS Example Dataset D @@ -365,7 +365,7 @@ summary {

Example evaluation of FOCUS Example Dataset D

Johannes Ranke

-

2020-05-26

+

2020-10-08

@@ -431,6 +431,8 @@ print(FOCUS_2006_D) 
fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE)
## Warning in mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE): Observations with value
 ## of zero were removed from the data
+
## Warning in mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE): Shapiro-Wilk test for
+## standardized residuals: p = 0.0165

A plot of the fit including a residual plot for both observed variables is obtained using the plot_sep method for mkinfit objects, which shows separate graphs for all compounds and their residuals.

plot_sep(fit, lpos = c("topright", "bottomright"))

@@ -440,9 +442,9 @@ print(FOCUS_2006_D)

A comprehensive report of the results is obtained using the summary method for mkinfit objects.

summary(fit)
## mkin version used for fitting:    0.9.50.3 
-## R version used for fitting:       4.0.0 
-## Date of fit:     Tue May 26 17:01:07 2020 
-## Date of summary: Tue May 26 17:01:07 2020 
+## R version used for fitting:       4.0.2 
+## Date of fit:     Thu Oct  8 09:06:19 2020 
+## Date of summary: Thu Oct  8 09:06:19 2020 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent * parent
@@ -450,7 +452,7 @@ print(FOCUS_2006_D)
## ## Model predictions using solution type analytical ## -## Fitted using 421 model solutions performed in 0.149 s +## Fitted using 421 model solutions performed in 0.152 s ## ## Error model: Constant variance ## @@ -474,6 +476,11 @@ print(FOCUS_2006_D) ## value type ## m1_0 0 state ## +## +## Warning(s): +## Observations with value of zero were removed from the data +## Shapiro-Wilk test for standardized residuals: p = 0.0165 +## ## Results: ## ## AIC BIC logLik -- cgit v1.2.1