From d852e9e000f57f280deb84611ae1af58daa883cc Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 18 Nov 2016 23:08:45 +0100 Subject: Fix links in README, configure navbar, rebuild docs --- vignettes/FOCUS_D.html | 25 +++++++++++++++---------- 1 file changed, 15 insertions(+), 10 deletions(-) (limited to 'vignettes/FOCUS_D.html') diff --git a/vignettes/FOCUS_D.html b/vignettes/FOCUS_D.html index fcf9d46d..40edec94 100644 --- a/vignettes/FOCUS_D.html +++ b/vignettes/FOCUS_D.html @@ -11,7 +11,7 @@ - + Example evaluation of FOCUS Example Dataset D @@ -21,7 +21,7 @@ - + @@ -119,14 +119,19 @@ $(document).ready(function () {

Example evaluation of FOCUS Example Dataset D

Johannes Ranke

-

2016-11-17

+

2016-11-18

This is just a very simple vignette showing how to fit a degradation model for a parent compound with one transformation product using mkin. After loading the library we look a the data. We have observed concentrations in the column named value at the times specified in column time for the two observed variables named parent and m1.

-
library("mkin")
-print(FOCUS_2006_D)
+
library("mkin")
+
## Loading required package: minpack.lm
+
## Loading required package: rootSolve
+
## Loading required package: inline
+
## Loading required package: methods
+
## Loading required package: parallel
+
print(FOCUS_2006_D)
##      name time  value
 ## 1  parent    0  99.46
 ## 2  parent    0 102.04
@@ -193,16 +198,16 @@ print(FOCUS_2006_D)
summary(fit)
## mkin version:    0.9.44.9000 
 ## R version:       3.3.2 
-## Date of fit:     Thu Nov 17 17:26:27 2016 
-## Date of summary: Thu Nov 17 17:26:28 2016 
+## Date of fit:     Fri Nov 18 22:48:53 2016 
+## Date of summary: Fri Nov 18 22:48:54 2016 
 ## 
 ## Equations:
-## d_parent = - k_parent_sink * parent - k_parent_m1 * parent
-## d_m1 = + k_parent_m1 * parent - k_m1_sink * m1
+## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
+## d_m1/dt = + k_parent_m1 * parent - k_m1_sink * m1
 ## 
 ## Model predictions using solution type deSolve 
 ## 
-## Fitted with method Port using 153 model solutions performed in 0.655 s
+## Fitted with method Port using 153 model solutions performed in 0.64 s
 ## 
 ## Weighting: none
 ## 
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