From 005a39e3f4413ae27d8334b8000abd1d25108a7a Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 23 Jun 2015 15:19:21 +0200 Subject: Vignettes rebuilt by staticdocs::build_site() for static documentation on r-forge --- vignettes/FOCUS_L.html | 78 +++++++++++++++++++++++++------------------------- 1 file changed, 39 insertions(+), 39 deletions(-) (limited to 'vignettes/FOCUS_L.html') diff --git a/vignettes/FOCUS_L.html b/vignettes/FOCUS_L.html index bb012d65..095c0ec0 100644 --- a/vignettes/FOCUS_L.html +++ b/vignettes/FOCUS_L.html @@ -91,17 +91,17 @@ FOCUS_2006_L1_mkin <- mkin_wide_to_long(FOCUS_2006_L1)

Since mkin version 0.9-32 (July 2014), we can use shorthand notation like SFO for parent only degradation models. The following two lines fit the model and produce the summary report of the model fit. This covers the numerical analysis given in the FOCUS report.

m.L1.SFO <- mkinfit("SFO", FOCUS_2006_L1_mkin, quiet=TRUE)
 summary(m.L1.SFO)
-
## mkin version:    0.9.37 
+
## mkin version:    0.9.38 
 ## R version:       3.2.1 
-## Date of fit:     Tue Jun 23 13:14:53 2015 
-## Date of summary: Tue Jun 23 13:14:53 2015 
+## Date of fit:     Tue Jun 23 15:18:14 2015 
+## Date of summary: Tue Jun 23 15:18:14 2015 
 ## 
 ## Equations:
 ## d_parent = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 37 model solutions performed in 0.1 s
+## Fitted with method Port using 37 model solutions performed in 0.101 s
 ## 
 ## Weighting: none
 ## 
@@ -181,10 +181,10 @@ summary(m.L1.SFO)

 
## Warning in mkinfit("FOMC", FOCUS_2006_L1_mkin, quiet = TRUE): Optimisation by method Port did not converge.
 ## Convergence code is 1

 
summary(m.L1.FOMC, data = FALSE)

-
## mkin version:    0.9.37 
+
## mkin version:    0.9.38 
 ## R version:       3.2.1 
-## Date of fit:     Tue Jun 23 13:14:54 2015 
-## Date of summary: Tue Jun 23 13:14:54 2015 
+## Date of fit:     Tue Jun 23 15:18:15 2015 
+## Date of summary: Tue Jun 23 15:18:15 2015 
 ## 
 ## 
 ## Warning: Optimisation by method Port did not converge.
@@ -196,7 +196,7 @@ summary(m.L1.SFO)

 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 188 model solutions performed in 0.539 s
+## Fitted with method Port using 188 model solutions performed in 0.484 s
 ## 
 ## Weighting: none
 ## 
@@ -261,10 +261,10 @@ FOCUS_2006_L2_mkin <- mkin_wide_to_long(FOCUS_2006_L2)

 
Again, the SFO model is fitted and a summary is obtained:

 
m.L2.SFO <- mkinfit("SFO", FOCUS_2006_L2_mkin, quiet=TRUE)
 summary(m.L2.SFO)

-
## mkin version:    0.9.37 
+
## mkin version:    0.9.38 
 ## R version:       3.2.1 
-## Date of fit:     Tue Jun 23 13:14:54 2015 
-## Date of summary: Tue Jun 23 13:14:54 2015 
+## Date of fit:     Tue Jun 23 15:18:15 2015 
+## Date of summary: Tue Jun 23 15:18:15 2015 
 ## 
 ## Equations:
 ## d_parent = - k_parent_sink * parent
@@ -349,17 +349,17 @@ plot(m.L2.FOMC)
 mkinresplot(m.L2.FOMC)

 

 
summary(m.L2.FOMC, data = FALSE)

-
## mkin version:    0.9.37 
+
## mkin version:    0.9.38 
 ## R version:       3.2.1 
-## Date of fit:     Tue Jun 23 13:14:54 2015 
-## Date of summary: Tue Jun 23 13:14:54 2015 
+## Date of fit:     Tue Jun 23 15:18:16 2015 
+## Date of summary: Tue Jun 23 15:18:16 2015 
 ## 
 ## Equations:
 ## d_parent = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 81 model solutions performed in 0.228 s
+## Fitted with method Port using 81 model solutions performed in 0.227 s
 ## 
 ## Weighting: none
 ## 
@@ -421,10 +421,10 @@ plot(m.L2.DFOP)

 plot(m.L2.DFOP)

 

 
summary(m.L2.DFOP, data = FALSE)

-
## mkin version:    0.9.37 
+
## mkin version:    0.9.38 
 ## R version:       3.2.1 
-## Date of fit:     Tue Jun 23 13:14:57 2015 
-## Date of summary: Tue Jun 23 13:14:57 2015 
+## Date of fit:     Tue Jun 23 15:18:18 2015 
+## Date of summary: Tue Jun 23 15:18:18 2015 
 ## 
 ## Equations:
 ## d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -433,7 +433,7 @@ plot(m.L2.DFOP)

 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 336 model solutions performed in 0.907 s
+## Fitted with method Port using 336 model solutions performed in 0.93 s
 ## 
 ## Weighting: none
 ## 
@@ -498,17 +498,17 @@ FOCUS_2006_L3_mkin <- mkin_wide_to_long(FOCUS_2006_L3)

 plot(m.L3.SFO)

 

 
summary(m.L3.SFO)

-
## mkin version:    0.9.37 
+
## mkin version:    0.9.38 
 ## R version:       3.2.1 
-## Date of fit:     Tue Jun 23 13:14:57 2015 
-## Date of summary: Tue Jun 23 13:14:57 2015 
+## Date of fit:     Tue Jun 23 15:18:19 2015 
+## Date of summary: Tue Jun 23 15:18:19 2015 
 ## 
 ## Equations:
 ## d_parent = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 43 model solutions performed in 0.112 s
+## Fitted with method Port using 43 model solutions performed in 0.111 s
 ## 
 ## Weighting: none
 ## 
@@ -574,17 +574,17 @@ plot(m.L3.SFO)

 plot(m.L3.FOMC)

 

 
summary(m.L3.FOMC, data = FALSE)

-
## mkin version:    0.9.37 
+
## mkin version:    0.9.38 
 ## R version:       3.2.1 
-## Date of fit:     Tue Jun 23 13:14:58 2015 
-## Date of summary: Tue Jun 23 13:14:58 2015 
+## Date of fit:     Tue Jun 23 15:18:19 2015 
+## Date of summary: Tue Jun 23 15:18:19 2015 
 ## 
 ## Equations:
 ## d_parent = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 83 model solutions performed in 0.204 s
+## Fitted with method Port using 83 model solutions performed in 0.213 s
 ## 
 ## Weighting: none
 ## 
@@ -640,10 +640,10 @@ plot(m.L3.FOMC)

 plot(m.L3.DFOP)

 

 
summary(m.L3.DFOP, data = FALSE)

-
## mkin version:    0.9.37 
+
## mkin version:    0.9.38 
 ## R version:       3.2.1 
-## Date of fit:     Tue Jun 23 13:14:58 2015 
-## Date of summary: Tue Jun 23 13:14:58 2015 
+## Date of fit:     Tue Jun 23 15:18:20 2015 
+## Date of summary: Tue Jun 23 15:18:20 2015 
 ## 
 ## Equations:
 ## d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -652,7 +652,7 @@ plot(m.L3.DFOP)

 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 137 model solutions performed in 0.359 s
+## Fitted with method Port using 137 model solutions performed in 0.348 s
 ## 
 ## Weighting: none
 ## 
@@ -722,17 +722,17 @@ FOCUS_2006_L4_mkin <- mkin_wide_to_long(FOCUS_2006_L4)

 plot(m.L4.SFO)

summary(m.L4.SFO, data = FALSE)
-
## mkin version:    0.9.37 
+
## mkin version:    0.9.38 
 ## R version:       3.2.1 
-## Date of fit:     Tue Jun 23 13:14:59 2015 
-## Date of summary: Tue Jun 23 13:14:59 2015 
+## Date of fit:     Tue Jun 23 15:18:20 2015 
+## Date of summary: Tue Jun 23 15:18:20 2015 
 ## 
 ## Equations:
 ## d_parent = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 46 model solutions performed in 0.12 s
+## Fitted with method Port using 46 model solutions performed in 0.115 s
 ## 
 ## Weighting: none
 ## 
@@ -787,17 +787,17 @@ plot(m.L4.SFO)

 plot(m.L4.FOMC)

summary(m.L4.FOMC, data = FALSE)
-
## mkin version:    0.9.37 
+
## mkin version:    0.9.38 
 ## R version:       3.2.1 
-## Date of fit:     Tue Jun 23 13:14:59 2015 
-## Date of summary: Tue Jun 23 13:14:59 2015 
+## Date of fit:     Tue Jun 23 15:18:20 2015 
+## Date of summary: Tue Jun 23 15:18:20 2015 
 ## 
 ## Equations:
 ## d_parent = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 66 model solutions performed in 0.163 s
+## Fitted with method Port using 66 model solutions performed in 0.169 s
 ## 
 ## Weighting: none
 ## 
-- 
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