From 97725f51ad869b7338208c19c33c8fbf5db29d18 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 22 Jun 2015 20:47:13 +0200 Subject: Vignettes rebuilt by staticdocs::build_site() for r-forge --- vignettes/FOCUS_L.html | 68 ++++++++++++++++++++++++-------------------------- 1 file changed, 32 insertions(+), 36 deletions(-) (limited to 'vignettes/FOCUS_L.html') diff --git a/vignettes/FOCUS_L.html b/vignettes/FOCUS_L.html index 153be558..488d5dc8 100644 --- a/vignettes/FOCUS_L.html +++ b/vignettes/FOCUS_L.html @@ -80,12 +80,8 @@ img {

Laboratory Data L1

The following code defines example dataset L1 from the FOCUS kinetics report, p. 284:

-
library("mkin")
-
## Loading required package: minpack.lm
-## Loading required package: rootSolve
-## Loading required package: inline
-## Loading required package: methods
-
FOCUS_2006_L1 = data.frame(
+
library("mkin")
+FOCUS_2006_L1 = data.frame(
   t = rep(c(0, 1, 2, 3, 5, 7, 14, 21, 30), each = 2),
   parent = c(88.3, 91.4, 85.6, 84.5, 78.9, 77.6, 
              72.0, 71.9, 50.3, 59.4, 47.0, 45.1,
@@ -97,15 +93,15 @@ FOCUS_2006_L1_mkin <- mkin_wide_to_long(FOCUS_2006_L1)

 summary(m.L1.SFO)
## mkin version:    0.9.37 
 ## R version:       3.2.1 
-## Date of fit:     Mon Jun 22 18:38:53 2015 
-## Date of summary: Mon Jun 22 18:38:53 2015 
+## Date of fit:     Mon Jun 22 20:44:34 2015 
+## Date of summary: Mon Jun 22 20:44:34 2015 
 ## 
 ## Equations:
 ## d_parent = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 37 model solutions performed in 0.089 s
+## Fitted with method Port using 37 model solutions performed in 0.093 s
 ## 
 ## Weighting: none
 ## 
@@ -187,8 +183,8 @@ summary(m.L1.SFO)
summary(m.L1.FOMC, data = FALSE)
## mkin version:    0.9.37 
 ## R version:       3.2.1 
-## Date of fit:     Mon Jun 22 18:38:54 2015 
-## Date of summary: Mon Jun 22 18:38:54 2015 
+## Date of fit:     Mon Jun 22 20:44:35 2015 
+## Date of summary: Mon Jun 22 20:44:35 2015 
 ## 
 ## 
 ## Warning: Optimisation by method Port did not converge.
@@ -200,7 +196,7 @@ summary(m.L1.SFO)
## ## Model predictions using solution type analytical ## -## Fitted with method Port using 188 model solutions performed in 0.397 s +## Fitted with method Port using 188 model solutions performed in 0.48 s ## ## Weighting: none ## @@ -267,15 +263,15 @@ FOCUS_2006_L2_mkin <- mkin_wide_to_long(FOCUS_2006_L2) summary(m.L2.SFO) 
## mkin version:    0.9.37 
 ## R version:       3.2.1 
-## Date of fit:     Mon Jun 22 18:38:54 2015 
-## Date of summary: Mon Jun 22 18:38:54 2015 
+## Date of fit:     Mon Jun 22 20:44:35 2015 
+## Date of summary: Mon Jun 22 20:44:35 2015 
 ## 
 ## Equations:
 ## d_parent = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 41 model solutions performed in 0.086 s
+## Fitted with method Port using 41 model solutions performed in 0.104 s
 ## 
 ## Weighting: none
 ## 
@@ -355,15 +351,15 @@ mkinresplot(m.L2.FOMC)
summary(m.L2.FOMC, data = FALSE)
## mkin version:    0.9.37 
 ## R version:       3.2.1 
-## Date of fit:     Mon Jun 22 18:38:54 2015 
-## Date of summary: Mon Jun 22 18:38:54 2015 
+## Date of fit:     Mon Jun 22 20:44:36 2015 
+## Date of summary: Mon Jun 22 20:44:36 2015 
 ## 
 ## Equations:
 ## d_parent = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 81 model solutions performed in 0.175 s
+## Fitted with method Port using 81 model solutions performed in 0.203 s
 ## 
 ## Weighting: none
 ## 
@@ -427,8 +423,8 @@ plot(m.L2.DFOP)
summary(m.L2.DFOP, data = FALSE)
## mkin version:    0.9.37 
 ## R version:       3.2.1 
-## Date of fit:     Mon Jun 22 18:38:56 2015 
-## Date of summary: Mon Jun 22 18:38:56 2015 
+## Date of fit:     Mon Jun 22 20:44:38 2015 
+## Date of summary: Mon Jun 22 20:44:38 2015 
 ## 
 ## Equations:
 ## d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -437,7 +433,7 @@ plot(m.L2.DFOP)
## ## Model predictions using solution type analytical ## -## Fitted with method Port using 336 model solutions performed in 0.751 s +## Fitted with method Port using 336 model solutions performed in 0.926 s ## ## Weighting: none ## @@ -504,15 +500,15 @@ plot(m.L3.SFO) 
summary(m.L3.SFO)
## mkin version:    0.9.37 
 ## R version:       3.2.1 
-## Date of fit:     Mon Jun 22 18:38:56 2015 
-## Date of summary: Mon Jun 22 18:38:56 2015 
+## Date of fit:     Mon Jun 22 20:44:38 2015 
+## Date of summary: Mon Jun 22 20:44:38 2015 
 ## 
 ## Equations:
 ## d_parent = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 43 model solutions performed in 0.088 s
+## Fitted with method Port using 43 model solutions performed in 0.132 s
 ## 
 ## Weighting: none
 ## 
@@ -580,15 +576,15 @@ plot(m.L3.FOMC)
summary(m.L3.FOMC, data = FALSE)
## mkin version:    0.9.37 
 ## R version:       3.2.1 
-## Date of fit:     Mon Jun 22 18:38:57 2015 
-## Date of summary: Mon Jun 22 18:38:57 2015 
+## Date of fit:     Mon Jun 22 20:44:39 2015 
+## Date of summary: Mon Jun 22 20:44:39 2015 
 ## 
 ## Equations:
 ## d_parent = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 83 model solutions performed in 0.178 s
+## Fitted with method Port using 83 model solutions performed in 0.221 s
 ## 
 ## Weighting: none
 ## 
@@ -646,8 +642,8 @@ plot(m.L3.DFOP)
summary(m.L3.DFOP, data = FALSE)
## mkin version:    0.9.37 
 ## R version:       3.2.1 
-## Date of fit:     Mon Jun 22 18:38:57 2015 
-## Date of summary: Mon Jun 22 18:38:57 2015 
+## Date of fit:     Mon Jun 22 20:44:39 2015 
+## Date of summary: Mon Jun 22 20:44:39 2015 
 ## 
 ## Equations:
 ## d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -656,7 +652,7 @@ plot(m.L3.DFOP)
## ## Model predictions using solution type analytical ## -## Fitted with method Port using 137 model solutions performed in 0.292 s +## Fitted with method Port using 137 model solutions performed in 0.372 s ## ## Weighting: none ## @@ -728,15 +724,15 @@ plot(m.L4.SFO) 
summary(m.L4.SFO, data = FALSE)
## mkin version:    0.9.37 
 ## R version:       3.2.1 
-## Date of fit:     Mon Jun 22 18:38:57 2015 
-## Date of summary: Mon Jun 22 18:38:57 2015 
+## Date of fit:     Mon Jun 22 20:44:40 2015 
+## Date of summary: Mon Jun 22 20:44:40 2015 
 ## 
 ## Equations:
 ## d_parent = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 46 model solutions performed in 0.102 s
+## Fitted with method Port using 46 model solutions performed in 0.115 s
 ## 
 ## Weighting: none
 ## 
@@ -793,15 +789,15 @@ plot(m.L4.FOMC)
summary(m.L4.FOMC, data = FALSE)
## mkin version:    0.9.37 
 ## R version:       3.2.1 
-## Date of fit:     Mon Jun 22 18:38:58 2015 
-## Date of summary: Mon Jun 22 18:38:58 2015 
+## Date of fit:     Mon Jun 22 20:44:40 2015 
+## Date of summary: Mon Jun 22 20:44:40 2015 
 ## 
 ## Equations:
 ## d_parent = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 66 model solutions performed in 0.137 s
+## Fitted with method Port using 66 model solutions performed in 0.169 s
 ## 
 ## Weighting: none
 ## 
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