From cc0d7a44cccac46ea1c71cf663aadee0efb2bba7 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 26 Jun 2015 16:08:04 +0200 Subject: Vignettes rebuilt by staticdocs::build_site() for static documentation on r-forge --- vignettes/FOCUS_L.html | 69 +++++++++++++++++++++++--------------------------- 1 file changed, 32 insertions(+), 37 deletions(-) (limited to 'vignettes/FOCUS_L.html') diff --git a/vignettes/FOCUS_L.html b/vignettes/FOCUS_L.html index 7e0ef4dd..7fb65960 100644 --- a/vignettes/FOCUS_L.html +++ b/vignettes/FOCUS_L.html @@ -80,13 +80,8 @@ img {

Laboratory Data L1

The following code defines example dataset L1 from the FOCUS kinetics report, p. 284:

-
library("mkin")
-
## Loading required package: minpack.lm
-## Loading required package: rootSolve
-## Loading required package: inline
-## Loading required package: methods
-## Loading required package: parallel
-
FOCUS_2006_L1 = data.frame(
+
library("mkin")
+FOCUS_2006_L1 = data.frame(
   t = rep(c(0, 1, 2, 3, 5, 7, 14, 21, 30), each = 2),
   parent = c(88.3, 91.4, 85.6, 84.5, 78.9, 77.6, 
              72.0, 71.9, 50.3, 59.4, 47.0, 45.1,
@@ -98,15 +93,15 @@ FOCUS_2006_L1_mkin <- mkin_wide_to_long(FOCUS_2006_L1)

 summary(m.L1.SFO)
## mkin version:    0.9.39 
 ## R version:       3.2.1 
-## Date of fit:     Fri Jun 26 14:41:41 2015 
-## Date of summary: Fri Jun 26 14:41:41 2015 
+## Date of fit:     Fri Jun 26 16:06:47 2015 
+## Date of summary: Fri Jun 26 16:06:47 2015 
 ## 
 ## Equations:
 ## d_parent = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 37 model solutions performed in 0.08 s
+## Fitted with method Port using 37 model solutions performed in 0.096 s
 ## 
 ## Weighting: none
 ## 
@@ -188,8 +183,8 @@ summary(m.L1.SFO)
summary(m.L1.FOMC, data = FALSE)
## mkin version:    0.9.39 
 ## R version:       3.2.1 
-## Date of fit:     Fri Jun 26 14:41:41 2015 
-## Date of summary: Fri Jun 26 14:41:41 2015 
+## Date of fit:     Fri Jun 26 16:06:48 2015 
+## Date of summary: Fri Jun 26 16:06:48 2015 
 ## 
 ## 
 ## Warning: Optimisation by method Port did not converge.
@@ -201,7 +196,7 @@ summary(m.L1.SFO)
## ## Model predictions using solution type analytical ## -## Fitted with method Port using 188 model solutions performed in 0.397 s +## Fitted with method Port using 188 model solutions performed in 0.555 s ## ## Weighting: none ## @@ -268,15 +263,15 @@ FOCUS_2006_L2_mkin <- mkin_wide_to_long(FOCUS_2006_L2) summary(m.L2.SFO) 
## mkin version:    0.9.39 
 ## R version:       3.2.1 
-## Date of fit:     Fri Jun 26 14:41:42 2015 
-## Date of summary: Fri Jun 26 14:41:42 2015 
+## Date of fit:     Fri Jun 26 16:06:48 2015 
+## Date of summary: Fri Jun 26 16:06:48 2015 
 ## 
 ## Equations:
 ## d_parent = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 41 model solutions performed in 0.087 s
+## Fitted with method Port using 41 model solutions performed in 0.112 s
 ## 
 ## Weighting: none
 ## 
@@ -356,15 +351,15 @@ mkinresplot(m.L2.FOMC)
summary(m.L2.FOMC, data = FALSE)
## mkin version:    0.9.39 
 ## R version:       3.2.1 
-## Date of fit:     Fri Jun 26 14:41:42 2015 
-## Date of summary: Fri Jun 26 14:41:42 2015 
+## Date of fit:     Fri Jun 26 16:06:49 2015 
+## Date of summary: Fri Jun 26 16:06:49 2015 
 ## 
 ## Equations:
 ## d_parent = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 81 model solutions performed in 0.175 s
+## Fitted with method Port using 81 model solutions performed in 0.21 s
 ## 
 ## Weighting: none
 ## 
@@ -428,8 +423,8 @@ plot(m.L2.DFOP)
summary(m.L2.DFOP, data = FALSE)
## mkin version:    0.9.39 
 ## R version:       3.2.1 
-## Date of fit:     Fri Jun 26 14:41:44 2015 
-## Date of summary: Fri Jun 26 14:41:44 2015 
+## Date of fit:     Fri Jun 26 16:06:52 2015 
+## Date of summary: Fri Jun 26 16:06:52 2015 
 ## 
 ## Equations:
 ## d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -438,7 +433,7 @@ plot(m.L2.DFOP)
## ## Model predictions using solution type analytical ## -## Fitted with method Port using 336 model solutions performed in 0.744 s +## Fitted with method Port using 336 model solutions performed in 0.945 s ## ## Weighting: none ## @@ -505,15 +500,15 @@ plot(m.L3.SFO) 
summary(m.L3.SFO)
## mkin version:    0.9.39 
 ## R version:       3.2.1 
-## Date of fit:     Fri Jun 26 14:41:44 2015 
-## Date of summary: Fri Jun 26 14:41:44 2015 
+## Date of fit:     Fri Jun 26 16:06:52 2015 
+## Date of summary: Fri Jun 26 16:06:52 2015 
 ## 
 ## Equations:
 ## d_parent = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 43 model solutions performed in 0.087 s
+## Fitted with method Port using 43 model solutions performed in 0.122 s
 ## 
 ## Weighting: none
 ## 
@@ -581,15 +576,15 @@ plot(m.L3.FOMC)
summary(m.L3.FOMC, data = FALSE)
## mkin version:    0.9.39 
 ## R version:       3.2.1 
-## Date of fit:     Fri Jun 26 14:41:44 2015 
-## Date of summary: Fri Jun 26 14:41:44 2015 
+## Date of fit:     Fri Jun 26 16:06:52 2015 
+## Date of summary: Fri Jun 26 16:06:52 2015 
 ## 
 ## Equations:
 ## d_parent = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 83 model solutions performed in 0.178 s
+## Fitted with method Port using 83 model solutions performed in 0.235 s
 ## 
 ## Weighting: none
 ## 
@@ -647,8 +642,8 @@ plot(m.L3.DFOP)
summary(m.L3.DFOP, data = FALSE)
## mkin version:    0.9.39 
 ## R version:       3.2.1 
-## Date of fit:     Fri Jun 26 14:41:45 2015 
-## Date of summary: Fri Jun 26 14:41:45 2015 
+## Date of fit:     Fri Jun 26 16:06:53 2015 
+## Date of summary: Fri Jun 26 16:06:53 2015 
 ## 
 ## Equations:
 ## d_parent = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -657,7 +652,7 @@ plot(m.L3.DFOP)
## ## Model predictions using solution type analytical ## -## Fitted with method Port using 137 model solutions performed in 0.287 s +## Fitted with method Port using 137 model solutions performed in 0.385 s ## ## Weighting: none ## @@ -729,15 +724,15 @@ plot(m.L4.SFO) 
summary(m.L4.SFO, data = FALSE)
## mkin version:    0.9.39 
 ## R version:       3.2.1 
-## Date of fit:     Fri Jun 26 14:41:45 2015 
-## Date of summary: Fri Jun 26 14:41:45 2015 
+## Date of fit:     Fri Jun 26 16:06:53 2015 
+## Date of summary: Fri Jun 26 16:06:53 2015 
 ## 
 ## Equations:
 ## d_parent = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 46 model solutions performed in 0.097 s
+## Fitted with method Port using 46 model solutions performed in 0.116 s
 ## 
 ## Weighting: none
 ## 
@@ -794,15 +789,15 @@ plot(m.L4.FOMC)
summary(m.L4.FOMC, data = FALSE)
## mkin version:    0.9.39 
 ## R version:       3.2.1 
-## Date of fit:     Fri Jun 26 14:41:45 2015 
-## Date of summary: Fri Jun 26 14:41:45 2015 
+## Date of fit:     Fri Jun 26 16:06:54 2015 
+## Date of summary: Fri Jun 26 16:06:54 2015 
 ## 
 ## Equations:
 ## d_parent = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 66 model solutions performed in 0.143 s
+## Fitted with method Port using 66 model solutions performed in 0.175 s
 ## 
 ## Weighting: none
 ## 
-- 
cgit v1.2.1