From a9427a09abdf7ce9aaeae7c7190f90c8f2e5ef52 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Mon, 15 Feb 2021 14:08:13 +0100
Subject: Improve README, introductory vignette and some other docs

Also bump version to 1.0.3.
---
 vignettes/twa.html | 46 ++++++++++++++++++++++++++++++++++++++++++----
 1 file changed, 42 insertions(+), 4 deletions(-)

(limited to 'vignettes/twa.html')

diff --git a/vignettes/twa.html b/vignettes/twa.html
index 663625bf..0bdc358c 100644
--- a/vignettes/twa.html
+++ b/vignettes/twa.html
@@ -12,10 +12,48 @@
 
 <meta name="author" content="Johannes Ranke" />
 
-<meta name="date" content="2020-10-08" />
 
 <title>Calculation of time weighted average concentrations with mkin</title>
 
+<script>// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
+</script>
+<script>// Hide empty <a> tag within highlighted CodeBlock for screen reader accessibility (see https://github.com/jgm/pandoc/issues/6352#issuecomment-626106786) -->
+// v0.0.1
+// Written by JooYoung Seo (jooyoung@psu.edu) and Atsushi Yasumoto on June 1st, 2020.
+
+document.addEventListener('DOMContentLoaded', function() {
+  const codeList = document.getElementsByClassName("sourceCode");
+  for (var i = 0; i < codeList.length; i++) {
+    var linkList = codeList[i].getElementsByTagName('a');
+    for (var j = 0; j < linkList.length; j++) {
+      if (linkList[j].innerHTML === "") {
+        linkList[j].setAttribute('aria-hidden', 'true');
+      }
+    }
+  }
+});
+</script>
+
+<style type="text/css">
+  code{white-space: pre-wrap;}
+  span.smallcaps{font-variant: small-caps;}
+  span.underline{text-decoration: underline;}
+  div.column{display: inline-block; vertical-align: top; width: 50%;}
+  div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
+  ul.task-list{list-style: none;}
+    </style>
+
 
 
 
@@ -215,7 +253,7 @@ code > span.er { color: #a61717; background-color: #e3d2d2; }
 
 <h1 class="title toc-ignore">Calculation of time weighted average concentrations with mkin</h1>
 <h4 class="author">Johannes Ranke</h4>
-<h4 class="date">2020-10-08</h4>
+<h4 class="date">Last change 18 September 2019 (rebuilt 2021-02-15)</h4>
 
 
 
@@ -251,9 +289,9 @@ code > span.er { color: #a61717; background-color: #e3d2d2; }
   \frac{1}{k_1} \left( 1 - e^{- k_1 t_b} \right) +
   \frac{e^{- k_1 t_b}}{k_2} \left( 1 - e^{- k_2 (t - t_b)} \right)  \right) \]</span></p>
 <p>Note that a method for calculating maximum moving window time weighted average concentrations for a model fitted by ‘mkinfit’ or from parent decline model parameters is included in the <code>max_twa_parent()</code> function. If the same is needed for metabolites, the function <code>pfm::max_twa()</code> from the ‘pfm’ package can be used.</p>
-<div id="refs" class="references">
+<div id="refs" class="references hanging-indent">
 <div id="ref-FOCUSkinetics2014">
-<p>FOCUS Work Group on Degradation Kinetics. 2014. <em>Generic Guidance for Estimating Persistence and Degradation Kinetics from Environmental Fate Studies on Pesticides in Eu Registration</em>. 1.1 ed. <a href="http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics" class="uri">http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics</a>.</p>
+<p>FOCUS Work Group on Degradation Kinetics. 2014. <em>Generic Guidance for Estimating Persistence and Degradation Kinetics from Environmental Fate Studies on Pesticides in Eu Registration</em>. 1.1 ed. <a href="http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics">http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics</a>.</p>
 </div>
 </div>
 
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