From 68f5f5c17e3e1c3f9272b9b663a4d7380433b530 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Sat, 4 Apr 2020 16:46:37 +0200 Subject: Add three functions to facilitate the use of nlme --- vignettes/web_only/compiled_models.R | 61 ------------------------------------ 1 file changed, 61 deletions(-) delete mode 100644 vignettes/web_only/compiled_models.R (limited to 'vignettes/web_only/compiled_models.R') diff --git a/vignettes/web_only/compiled_models.R b/vignettes/web_only/compiled_models.R deleted file mode 100644 index 691037ec..00000000 --- a/vignettes/web_only/compiled_models.R +++ /dev/null @@ -1,61 +0,0 @@ -## ---- include = FALSE--------------------------------------------------------- -library(knitr) -opts_chunk$set(tidy = FALSE, cache = FALSE) - -## ----check_gcc, eval = FALSE-------------------------------------------------- -# pkgbuild::has_compiler() - -## ----Rprofile, eval = FALSE--------------------------------------------------- -# Sys.setenv(PATH = paste("C:/Rtools/bin", Sys.getenv("PATH"), sep=";")) - -## ----HOME, eval = FALSE------------------------------------------------------- -# Sys.getenv("HOME") - -## ----create_SFO_SFO----------------------------------------------------------- -library("mkin", quietly = TRUE) -SFO_SFO <- mkinmod( - parent = mkinsub("SFO", "m1"), - m1 = mkinsub("SFO")) - -## ----benchmark_SFO_SFO, fig.height = 3, message = FALSE, warning = FALSE------ -if (require(rbenchmark)) { - b.1 <- benchmark( - "deSolve, not compiled" = mkinfit(SFO_SFO, FOCUS_2006_D, - solution_type = "deSolve", - use_compiled = FALSE, quiet = TRUE), - "Eigenvalue based" = mkinfit(SFO_SFO, FOCUS_2006_D, - solution_type = "eigen", quiet = TRUE), - "deSolve, compiled" = mkinfit(SFO_SFO, FOCUS_2006_D, - solution_type = "deSolve", quiet = TRUE), - replications = 3) - print(b.1) - factor_SFO_SFO <- round(b.1["1", "relative"]) -} else { - factor_SFO_SFO <- NA - print("R package rbenchmark is not available") -} - -## ----benchmark_FOMC_SFO, fig.height = 3, warning = FALSE---------------------- -if (require(rbenchmark)) { - FOMC_SFO <- mkinmod( - parent = mkinsub("FOMC", "m1"), - m1 = mkinsub( "SFO")) - - b.2 <- benchmark( - "deSolve, not compiled" = mkinfit(FOMC_SFO, FOCUS_2006_D, - use_compiled = FALSE, quiet = TRUE), - "deSolve, compiled" = mkinfit(FOMC_SFO, FOCUS_2006_D, quiet = TRUE), - replications = 3) - print(b.2) - factor_FOMC_SFO <- round(b.2["1", "relative"]) -} else { - factor_FOMC_SFO <- NA - print("R package benchmark is not available") -} - -## ----sessionInfo, echo = FALSE------------------------------------------------ -cat(utils::capture.output(utils::sessionInfo())[1:3], sep = "\n") -if(!inherits(try(cpuinfo <- readLines("/proc/cpuinfo")), "try-error")) { - cat(gsub("model name\t: ", "CPU model: ", cpuinfo[grep("model name", cpuinfo)[1]])) -} - -- cgit v1.2.1