From 40b78bed232798ecbeb72759cdf8d400ea35b31f Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 23 Jul 2021 13:55:34 +0200 Subject: Some example evaluations of dimethenamid data Evaluations with nlme, saemix and nlmixr are included --- .../figure-html/f_parent_mkin_dfop_const-1.png | Bin 0 -> 60693 bytes .../figure-html/f_parent_mkin_dfop_const_test-1.png | Bin 0 -> 60929 bytes .../figure-html/f_parent_mkin_dfop_tc_test-1.png | Bin 0 -> 62234 bytes .../figure-html/f_parent_mkin_sfo_const-1.png | Bin 0 -> 58445 bytes .../figure-html/f_parent_nlmixr_saem_dfop_const-1.png | Bin 0 -> 92167 bytes .../figure-html/f_parent_nlmixr_saem_dfop_tc-1.png | Bin 0 -> 76934 bytes .../figure-html/f_parent_nlmixr_saem_sfo_const-1.png | Bin 0 -> 62426 bytes .../figure-html/f_parent_nlmixr_saem_sfo_tc-1.png | Bin 0 -> 70230 bytes .../figure-html/f_parent_saemix_dfop_const-1.png | Bin 0 -> 41208 bytes .../f_parent_saemix_dfop_const_moreiter-1.png | Bin 0 -> 39456 bytes .../figure-html/f_parent_saemix_dfop_tc-1.png | Bin 0 -> 31646 bytes .../figure-html/f_parent_saemix_dfop_tc_moreiter-1.png | Bin 0 -> 32077 bytes .../figure-html/f_parent_saemix_sfo_const-1.png | Bin 0 -> 35758 bytes .../figure-html/f_parent_saemix_sfo_tc-1.png | Bin 0 -> 30708 bytes .../figure-html/f_parent_saemix_sfo_tc_moreiter-1.png | Bin 0 -> 30416 bytes .../figure-html/plot_parent_nlme-1.png | Bin 0 -> 60491 bytes 16 files changed, 0 insertions(+), 0 deletions(-) create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const_test-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_tc_test-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_sfo_const-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const_moreiter-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_moreiter-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_const-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc_moreiter-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/plot_parent_nlme-1.png (limited to 'vignettes/web_only/dimethenamid_2018_files/figure-html') diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const-1.png new file mode 100644 index 00000000..de699f30 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const_test-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const_test-1.png new file mode 100644 index 00000000..5f752168 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const_test-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_tc_test-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_tc_test-1.png new file mode 100644 index 00000000..0265c22f Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_tc_test-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_sfo_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_sfo_const-1.png new file mode 100644 index 00000000..9bbb57c7 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_sfo_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png new file mode 100644 index 00000000..043a1fca Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png new file mode 100644 index 00000000..7d2aea59 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png new file mode 100644 index 00000000..032d6043 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png new file mode 100644 index 00000000..a602715c Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const-1.png new file mode 100644 index 00000000..621d34f2 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const_moreiter-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const_moreiter-1.png new file mode 100644 index 00000000..e127b354 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const_moreiter-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc-1.png new file mode 100644 index 00000000..ecc6ccf3 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_moreiter-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_moreiter-1.png new file mode 100644 index 00000000..1337ea8f Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_moreiter-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_const-1.png new file mode 100644 index 00000000..492a7888 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc-1.png new file mode 100644 index 00000000..5e3b9c13 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc_moreiter-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc_moreiter-1.png new file mode 100644 index 00000000..3ca2804d Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc_moreiter-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/plot_parent_nlme-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/plot_parent_nlme-1.png new file mode 100644 index 00000000..a48f41b2 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/plot_parent_nlme-1.png differ -- cgit v1.2.1 From c41381a961263c28d60976e68923157916c78b15 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 16 Sep 2021 15:31:13 +0200 Subject: Adapt and improve the dimethenamid vignette Adapt to the corrected data and unify control parameters for saemix and nlmixr with saem. Update docs --- .../figure-html/f_parent_mkin_dfop_const-1.png | Bin 60693 -> 58963 bytes .../figure-html/f_parent_mkin_dfop_const_test-1.png | Bin 60929 -> 59123 bytes .../figure-html/f_parent_mkin_dfop_tc_test-1.png | Bin 62234 -> 60654 bytes .../figure-html/f_parent_mkin_sfo_const-1.png | Bin 58445 -> 57222 bytes .../f_parent_nlmixr_saem_dfop_const-1.png | Bin 92167 -> 87338 bytes .../figure-html/f_parent_nlmixr_saem_dfop_tc-1.png | Bin 76934 -> 81506 bytes .../f_parent_nlmixr_saem_sfo_const-1.png | Bin 62426 -> 72547 bytes .../figure-html/f_parent_nlmixr_saem_sfo_tc-1.png | Bin 70230 -> 73363 bytes .../figure-html/f_parent_saemix_dfop_const-1.png | Bin 41208 -> 38179 bytes .../f_parent_saemix_dfop_const_moreiter-1.png | Bin 39456 -> 0 bytes .../figure-html/f_parent_saemix_dfop_tc-1.png | Bin 31646 -> 30583 bytes .../f_parent_saemix_dfop_tc_moreiter-1.png | Bin 32077 -> 0 bytes .../figure-html/f_parent_saemix_sfo_const-1.png | Bin 35758 -> 34645 bytes .../figure-html/f_parent_saemix_sfo_tc-1.png | Bin 30708 -> 28683 bytes .../f_parent_saemix_sfo_tc_moreiter-1.png | Bin 30416 -> 0 bytes .../figure-html/plot_parent_nlme-1.png | Bin 60491 -> 59533 bytes 16 files changed, 0 insertions(+), 0 deletions(-) delete mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const_moreiter-1.png delete mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_moreiter-1.png delete mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc_moreiter-1.png (limited to 'vignettes/web_only/dimethenamid_2018_files/figure-html') diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const-1.png index de699f30..950abf27 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const_test-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const_test-1.png index 5f752168..66481bc1 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const_test-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const_test-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_tc_test-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_tc_test-1.png index 0265c22f..557ccc45 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_tc_test-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_tc_test-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_sfo_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_sfo_const-1.png index 9bbb57c7..089ab64d 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_sfo_const-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_sfo_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png index 043a1fca..1b97c17e 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png index 7d2aea59..21a381a5 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png index 032d6043..f58d35ff 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png index a602715c..6d433aaa 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const-1.png index 621d34f2..81a4b97f 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const_moreiter-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const_moreiter-1.png deleted file mode 100644 index e127b354..00000000 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const_moreiter-1.png and /dev/null differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc-1.png index ecc6ccf3..bcd023c5 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_moreiter-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_moreiter-1.png deleted file mode 100644 index 1337ea8f..00000000 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_moreiter-1.png and /dev/null differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_const-1.png index 492a7888..30c2325e 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_const-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc-1.png index 5e3b9c13..111d8753 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc_moreiter-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc_moreiter-1.png deleted file mode 100644 index 3ca2804d..00000000 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc_moreiter-1.png and /dev/null differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/plot_parent_nlme-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/plot_parent_nlme-1.png index a48f41b2..849296d9 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/plot_parent_nlme-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/plot_parent_nlme-1.png differ -- cgit v1.2.1 From 5c15ef747568b3a9a9c094b6aa546dc80e3aa87a Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 27 Sep 2021 20:10:01 +0200 Subject: intervals() methods, more DFOP/tc variants --- .../f_parent_nlmixr_saem_dfop_const-1.png | Bin 87338 -> 96984 bytes .../figure-html/f_parent_nlmixr_saem_dfop_tc-1.png | Bin 81506 -> 83994 bytes .../f_parent_nlmixr_saem_dfop_tc_10k-1.png | Bin 0 -> 82918 bytes .../f_parent_nlmixr_saem_dfop_tc_10k-2.png | Bin 0 -> 82918 bytes .../f_parent_nlmixr_saem_dfop_tc_1k-1.png | Bin 0 -> 81506 bytes .../f_parent_nlmixr_saem_dfop_tc_manymoreiter-1.png | Bin 0 -> 83761 bytes .../f_parent_nlmixr_saem_sfo_const-1.png | Bin 72547 -> 74354 bytes .../figure-html/f_parent_nlmixr_saem_sfo_tc-1.png | Bin 73363 -> 76153 bytes .../figure-html/f_parent_saemix_dfop_tc_10k-1.png | Bin 0 -> 30184 bytes .../f_parent_saemix_dfop_tc_manymoreiter-1.png | Bin 0 -> 30819 bytes .../figure-html/f_parent_saemix_dfop_tc_mkin-1.png | Bin 0 -> 32242 bytes .../f_parent_saemix_dfop_tc_mkin_10k-1.png | Bin 0 -> 29137 bytes 12 files changed, 0 insertions(+), 0 deletions(-) create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-2.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_1k-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_manymoreiter-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_10k-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_manymoreiter-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin-1.png create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin_10k-1.png (limited to 'vignettes/web_only/dimethenamid_2018_files/figure-html') diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png index 1b97c17e..4dd55f98 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png index 21a381a5..c8bb7c91 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-1.png new file mode 100644 index 00000000..fb410d33 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-2.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-2.png new file mode 100644 index 00000000..fb410d33 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-2.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_1k-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_1k-1.png new file mode 100644 index 00000000..21a381a5 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_1k-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_manymoreiter-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_manymoreiter-1.png new file mode 100644 index 00000000..0cea183d Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_manymoreiter-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png index f58d35ff..dccef3d2 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png index 6d433aaa..8695b61c 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_10k-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_10k-1.png new file mode 100644 index 00000000..3f04f023 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_10k-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_manymoreiter-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_manymoreiter-1.png new file mode 100644 index 00000000..8522c2ea Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_manymoreiter-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin-1.png new file mode 100644 index 00000000..0900f33d Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin_10k-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin_10k-1.png new file mode 100644 index 00000000..e924cc16 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin_10k-1.png differ -- cgit v1.2.1 From e7751e791f46b2aa334f52109e0bd8211dfd7083 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 11 Jan 2022 19:28:22 +0100 Subject: Update the dimethenamid vignette with current saemix Convergence is faster with this version (@ecomets mentioned that there was a bugfix lately that could lead to faster convergence). However, if I use too many iterations (i.e. 10 000 as in the last version of this vignette), I get an error in solving omega.teta during later iterations, apparently due to overparameterisation of the DFOP model in this case. --- .../f_parent_nlmixr_saem_dfop_const-1.png | Bin 96984 -> 94264 bytes .../figure-html/f_parent_nlmixr_saem_dfop_tc-1.png | Bin 83994 -> 82238 bytes .../f_parent_nlmixr_saem_dfop_tc_10k-1.png | Bin 82918 -> 81793 bytes .../f_parent_nlmixr_saem_dfop_tc_1k-1.png | Bin 81506 -> 77251 bytes .../f_parent_nlmixr_saem_sfo_const-1.png | Bin 74354 -> 71898 bytes .../figure-html/f_parent_nlmixr_saem_sfo_tc-1.png | Bin 76153 -> 77093 bytes .../figure-html/f_parent_saemix_dfop_const-1.png | Bin 38179 -> 36337 bytes .../figure-html/f_parent_saemix_dfop_tc-1.png | Bin 30583 -> 29299 bytes .../figure-html/f_parent_saemix_dfop_tc_mkin-1.png | Bin 32242 -> 31578 bytes .../f_parent_saemix_dfop_tc_mkin_moreiter-1.png | Bin 0 -> 32137 bytes .../figure-html/f_parent_saemix_sfo_const-1.png | Bin 34645 -> 32949 bytes .../figure-html/f_parent_saemix_sfo_tc-1.png | Bin 28683 -> 28655 bytes 12 files changed, 0 insertions(+), 0 deletions(-) create mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin_moreiter-1.png (limited to 'vignettes/web_only/dimethenamid_2018_files/figure-html') diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png index 4dd55f98..88089aaf 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png index c8bb7c91..efc37a5f 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-1.png index fb410d33..ab2b1b2d 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_1k-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_1k-1.png index 21a381a5..aac73dbe 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_1k-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_1k-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png index dccef3d2..de0a0ded 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png index 8695b61c..0b7f5090 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const-1.png index 81a4b97f..84a6fc92 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc-1.png index bcd023c5..d154dc9b 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin-1.png index 0900f33d..c676406e 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin_moreiter-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin_moreiter-1.png new file mode 100644 index 00000000..e3c21563 Binary files /dev/null and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin_moreiter-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_const-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_const-1.png index 30c2325e..7862fc65 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_const-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_const-1.png differ diff --git a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc-1.png b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc-1.png index 111d8753..800c320b 100644 Binary files a/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc-1.png and b/vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc-1.png differ -- cgit v1.2.1