From 7a3f2ee22419608a8a634fd4d71d7176303b2f41 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Mon, 19 Sep 2022 12:55:00 +0200
Subject: Improve parhist and llhist

In particular, adapt the display of parameter boxplots
for saem fits using mkin transformations to the way
used for saem fits using saemix transformations, i.e.
always show parameters on the natural scale, and normalised them by
dividing by the median from the multiple runs.
---
 vignettes/web_only/multistart.rmd | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'vignettes/web_only/multistart.rmd')

diff --git a/vignettes/web_only/multistart.rmd b/vignettes/web_only/multistart.rmd
index a25b73ce..8f349973 100644
--- a/vignettes/web_only/multistart.rmd
+++ b/vignettes/web_only/multistart.rmd
@@ -1,7 +1,7 @@
 ---
 title: Short demo of the multistart method
 author: Johannes Ranke
-date: Last change 16 September 2022 (rebuilt `r Sys.Date()`)
+date: Last change 19 September 2022 (rebuilt `r Sys.Date()`)
 output:
   html_document
 vignette: >
@@ -34,7 +34,7 @@ random effects for all degradation parameters.
 f_mmkin <- mmkin("DFOP", dmta_ds, error_model = "tc", cores = 7, quiet = TRUE)
 f_saem_full <- saem(f_mmkin)
 f_saem_full_multi <- multistart(f_saem_full, n = 16, cores = 16)
-parhist(f_saem_full_multi, lpos = "bottomright")
+parhist(f_saem_full_multi)
 ```
 
 We see that not all variability parameters are identifiable, most problematic
@@ -44,7 +44,7 @@ removing the intersoil variability for this parameter.
 ```{r}
 f_saem_reduced <- update(f_saem_full, covariance.model = diag(c(1, 1, 0, 1)))
 f_saem_reduced_multi <- multistart(f_saem_reduced, n = 16, cores = 16)
-parhist(f_saem_reduced_multi, lpos = "bottomright")
+parhist(f_saem_reduced_multi, lpos = "topright")
 ```
 
 We can also analyse the log-likelihoods obtained in the multiple runs:
-- 
cgit v1.2.1

