From a9427a09abdf7ce9aaeae7c7190f90c8f2e5ef52 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 15 Feb 2021 14:08:13 +0100 Subject: Improve README, introductory vignette and some other docs Also bump version to 1.0.3. --- vignettes/FOCUS_D.html | 78 +++------ vignettes/FOCUS_D.rmd | 2 +- vignettes/FOCUS_L.html | 190 ++++++++++------------ vignettes/FOCUS_L.rmd | 2 +- vignettes/mkin.html | 108 ++++++------- vignettes/mkin.rmd | 94 ++++++----- vignettes/references.bib | 18 ++- vignettes/twa.html | 46 +++++- vignettes/twa.rmd | 2 +- vignettes/web_only/FOCUS_Z.html | 136 +++++++++------- vignettes/web_only/FOCUS_Z.rmd | 2 +- vignettes/web_only/NAFTA_examples.html | 280 ++++++++++++++++++--------------- vignettes/web_only/NAFTA_examples.rmd | 2 +- vignettes/web_only/benchmarks.html | 142 ++++++++++++++--- vignettes/web_only/benchmarks.rmd | 2 +- vignettes/web_only/mkin_benchmarks.rda | Bin 1085 -> 1081 bytes 16 files changed, 619 insertions(+), 485 deletions(-) (limited to 'vignettes') diff --git a/vignettes/FOCUS_D.html b/vignettes/FOCUS_D.html index 8ebd1047..f1f078db 100644 --- a/vignettes/FOCUS_D.html +++ b/vignettes/FOCUS_D.html @@ -11,10 +11,22 @@ - Example evaluation of FOCUS Example Dataset D + - - - - - - + @@ -215,7 +253,7 @@ code > span.er { color: #a61717; background-color: #e3d2d2; }

Calculation of time weighted average concentrations with mkin

Johannes Ranke

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2020-10-08

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Last change 18 September 2019 (rebuilt 2021-02-15)

@@ -251,9 +289,9 @@ code > span.er { color: #a61717; background-color: #e3d2d2; } \frac{1}{k_1} \left( 1 - e^{- k_1 t_b} \right) + \frac{e^{- k_1 t_b}}{k_2} \left( 1 - e^{- k_2 (t - t_b)} \right) \right) \]

Note that a method for calculating maximum moving window time weighted average concentrations for a model fitted by ‘mkinfit’ or from parent decline model parameters is included in the max_twa_parent() function. If the same is needed for metabolites, the function pfm::max_twa() from the ‘pfm’ package can be used.

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FOCUS Work Group on Degradation Kinetics. 2014. Generic Guidance for Estimating Persistence and Degradation Kinetics from Environmental Fate Studies on Pesticides in Eu Registration. 1.1 ed. http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics.

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FOCUS Work Group on Degradation Kinetics. 2014. Generic Guidance for Estimating Persistence and Degradation Kinetics from Environmental Fate Studies on Pesticides in Eu Registration. 1.1 ed. http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics.

diff --git a/vignettes/twa.rmd b/vignettes/twa.rmd index 6f283eb2..52baf8aa 100644 --- a/vignettes/twa.rmd +++ b/vignettes/twa.rmd @@ -1,7 +1,7 @@ --- title: Calculation of time weighted average concentrations with mkin author: Johannes Ranke -date: "`r Sys.Date()`" +date: Last change 18 September 2019 (rebuilt `r Sys.Date()`) bibliography: references.bib output: rmarkdown::html_vignette vignette: > diff --git a/vignettes/web_only/FOCUS_Z.html b/vignettes/web_only/FOCUS_Z.html index e8e6e2b4..035b8f84 100644 --- a/vignettes/web_only/FOCUS_Z.html +++ b/vignettes/web_only/FOCUS_Z.html @@ -11,10 +11,22 @@ - Example evaluation of FOCUS dataset Z + + + + + + +