From c41381a961263c28d60976e68923157916c78b15 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 16 Sep 2021 15:31:13 +0200 Subject: Adapt and improve the dimethenamid vignette Adapt to the corrected data and unify control parameters for saemix and nlmixr with saem. Update docs --- vignettes/FOCUS_D.html | 10 +- vignettes/FOCUS_L.html | 71 +++--- vignettes/mkin.html | 2 +- vignettes/references.bib | 13 ++ vignettes/twa.html | 2 +- vignettes/web_only/.build.timestamp | 0 vignettes/web_only/dimethenamid_2018.R | 116 ++++++++++ vignettes/web_only/dimethenamid_2018.html | 250 +++++++++++---------- vignettes/web_only/dimethenamid_2018.rmd | 248 ++++++++++---------- .../figure-html/f_parent_mkin_dfop_const-1.png | Bin 60693 -> 58963 bytes .../f_parent_mkin_dfop_const_test-1.png | Bin 60929 -> 59123 bytes .../figure-html/f_parent_mkin_dfop_tc_test-1.png | Bin 62234 -> 60654 bytes .../figure-html/f_parent_mkin_sfo_const-1.png | Bin 58445 -> 57222 bytes .../f_parent_nlmixr_saem_dfop_const-1.png | Bin 92167 -> 87338 bytes .../figure-html/f_parent_nlmixr_saem_dfop_tc-1.png | Bin 76934 -> 81506 bytes .../f_parent_nlmixr_saem_sfo_const-1.png | Bin 62426 -> 72547 bytes .../figure-html/f_parent_nlmixr_saem_sfo_tc-1.png | Bin 70230 -> 73363 bytes .../figure-html/f_parent_saemix_dfop_const-1.png | Bin 41208 -> 38179 bytes .../f_parent_saemix_dfop_const_moreiter-1.png | Bin 39456 -> 0 bytes .../figure-html/f_parent_saemix_dfop_tc-1.png | Bin 31646 -> 30583 bytes .../f_parent_saemix_dfop_tc_moreiter-1.png | Bin 32077 -> 0 bytes .../figure-html/f_parent_saemix_sfo_const-1.png | Bin 35758 -> 34645 bytes .../figure-html/f_parent_saemix_sfo_tc-1.png | Bin 30708 -> 28683 bytes .../f_parent_saemix_sfo_tc_moreiter-1.png | Bin 30416 -> 0 bytes .../figure-html/plot_parent_nlme-1.png | Bin 60491 -> 59533 bytes 25 files changed, 438 insertions(+), 274 deletions(-) delete mode 100644 vignettes/web_only/.build.timestamp create mode 100644 vignettes/web_only/dimethenamid_2018.R delete mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const_moreiter-1.png delete mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_moreiter-1.png delete mode 100644 vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc_moreiter-1.png (limited to 'vignettes') diff --git a/vignettes/FOCUS_D.html b/vignettes/FOCUS_D.html index 0e983b98..ba514c18 100644 --- a/vignettes/FOCUS_D.html +++ b/vignettes/FOCUS_D.html @@ -360,7 +360,7 @@ pre code {

Example evaluation of FOCUS Example Dataset D

Johannes Ranke

-

Last change 31 January 2019 (rebuilt 2021-09-15)

+

Last change 31 January 2019 (rebuilt 2021-09-16)

@@ -434,10 +434,10 @@ print(FOCUS_2006_D)

A comprehensive report of the results is obtained using the summary method for mkinfit objects.

summary(fit)
-
## mkin version used for fitting:    1.0.5 
+
## mkin version used for fitting:    1.1.0 
 ## R version used for fitting:       4.1.1 
-## Date of fit:     Wed Sep 15 17:39:28 2021 
-## Date of summary: Wed Sep 15 17:39:28 2021 
+## Date of fit:     Thu Sep 16 13:57:32 2021 
+## Date of summary: Thu Sep 16 13:57:33 2021 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent * parent
@@ -445,7 +445,7 @@ print(FOCUS_2006_D)

 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted using 401 model solutions performed in 0.143 s
+## Fitted using 401 model solutions performed in 0.149 s
 ## 
 ## Error model: Constant variance 
 ## 
diff --git a/vignettes/FOCUS_L.html b/vignettes/FOCUS_L.html
index 717a01be..b6ebb606 100644
--- a/vignettes/FOCUS_L.html
+++ b/vignettes/FOCUS_L.html
@@ -27,11 +27,8 @@ document.addEventListener('DOMContentLoaded', function(e) {
   }
 });
 
-