\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlstd{Z.FOCUS} \hlkwb{<-} \hlkwd{mkinmod}\hlstd{(}\hlkwc{Z0} \hlstd{=} \hlkwd{mkinsub}\hlstd{(}\hlstr{"SFO"}\hlstd{,} \hlstr{"Z1"}\hlstd{,} \hlkwc{sink} \hlstd{=} \hlnum{FALSE}\hlstd{),}
                   \hlkwc{Z1} \hlstd{=} \hlkwd{mkinsub}\hlstd{(}\hlstr{"SFO"}\hlstd{,} \hlstr{"Z2"}\hlstd{,} \hlkwc{sink} \hlstd{=} \hlnum{FALSE}\hlstd{),}
                   \hlkwc{Z2} \hlstd{=} \hlkwd{mkinsub}\hlstd{(}\hlstr{"SFO"}\hlstd{,} \hlstr{"Z3"}\hlstd{),}
                   \hlkwc{Z3} \hlstd{=} \hlkwd{mkinsub}\hlstd{(}\hlstr{"SFO"}\hlstd{),}
                   \hlkwc{use_of_ff} \hlstd{=} \hlstr{"max"}\hlstd{)}
\end{alltt}
\begin{verbatim}
## make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
\end{verbatim}


{\ttfamily\noindent\itshape\color{messagecolor}{\#\# Successfully compiled differential equation model from auto-generated C code.}}\begin{alltt}
\hlstd{m.Z.FOCUS} \hlkwb{<-} \hlkwd{mkinfit}\hlstd{(Z.FOCUS, FOCUS_2006_Z_mkin,}
                     \hlkwc{parms.ini} \hlstd{= m.Z.5}\hlopt{$}\hlstd{bparms.ode,}
                     \hlkwc{quiet} \hlstd{=} \hlnum{TRUE}\hlstd{)}
\hlkwd{plot_sep}\hlstd{(m.Z.FOCUS)}
\end{alltt}
\end{kframe}
\includegraphics[width=\maxwidth]{figure/FOCUS_2006_Z_fits_6-1} 
\begin{kframe}\begin{alltt}
\hlkwd{summary}\hlstd{(m.Z.FOCUS,} \hlkwc{data} \hlstd{=} \hlnum{FALSE}\hlstd{)}\hlopt{$}\hlstd{bpar}
\end{alltt}
\begin{verbatim}
##               Estimate se_notrans   t value       Pr(>t)       Lower
## Z0_0       96.83849566 2.05886133 47.034977 5.583742e-44 92.70517559
## k_Z0        2.21540897 0.11813046 18.753919 7.744034e-25  1.99051134
## k_Z1        0.47829896 0.02928763 16.331089 3.333376e-22  0.42297603
## k_Z2        0.45161653 0.04421268 10.214638 3.110936e-14  0.37103495
## k_Z3        0.05869343 0.01429485  4.105914 7.285393e-05  0.03599566
## f_Z2_to_Z3  0.47150952 0.05705233  8.264510 2.809889e-11  0.36038193
##                   Upper
## Z0_0       100.97181573
## k_Z0         2.46571661
## k_Z1         0.54085782
## k_Z2         0.54969886
## k_Z3         0.09570371
## f_Z2_to_Z3   0.58553462
\end{verbatim}
\begin{alltt}
\hlkwd{endpoints}\hlstd{(m.Z.FOCUS)}
\end{alltt}
\begin{verbatim}
## $ff
##     Z2_Z3   Z2_sink 
## 0.4715095 0.5284905 
## 
## $SFORB
## logical(0)
## 
## $distimes
##          DT50      DT90
## Z0  0.3128755  1.039350
## Z1  1.4491923  4.814113
## Z2  1.5348136  5.098540
## Z3 11.8096217 39.230714
\end{verbatim}
\end{kframe}
\end{knitrout}