In addition to the datasets, the pathways in the degradation model can be specified as well.
Arguments
- ds
A named list of datasets in long format as compatible with
mkinfit
.- map
A character vector with CAKE compartment names (Parent, A1, ...), named with the names used in the list of datasets.
- links
An optional character vector of target compartments, named with the names of the source compartments. In order to make this easier, the names are used as in the datasets supplied.
- filename
Where to write the result. Should end in .csf in order to be compatible with CAKE.
- path
An optional path to the output file.
- overwrite
If TRUE, existing files are overwritten.
- study
The name of the study.
- description
An optional description.
- time_unit
The time unit for the residue data.
- res_unit
The unit used for the residues.
- comment
An optional comment.
- date
The date of file creation.
- optimiser
Can be OLS or IRLS.