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href="https://github.com/jranke/mkin/blob/HEAD/R/CAKE_export.R" class="external-link"><code>R/CAKE_export.R</code></a></small> <div class="hidden name"><code>CAKE_export.Rd</code></div> </div> <div class="ref-description"> <p>In addition to the datasets, the pathways in the degradation model can be specified as well.</p> </div> <div id="ref-usage"> <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">CAKE_export</span><span class="op">(</span></span> <span> <span class="va">ds</span>,</span> <span> map <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span>parent <span class="op">=</span> <span class="st">"Parent"</span><span class="op">)</span>,</span> <span> links <span class="op">=</span> <span class="cn">NA</span>,</span> <span> filename <span class="op">=</span> <span class="st">"CAKE_export.csf"</span>,</span> <span> path <span class="op">=</span> <span class="st">"."</span>,</span> <span> overwrite <span class="op">=</span> <span class="cn">FALSE</span>,</span> <span> study <span class="op">=</span> <span class="st">"Degradinol aerobic soil degradation"</span>,</span> <span> description <span class="op">=</span> <span class="st">""</span>,</span> <span> time_unit <span class="op">=</span> <span class="st">"days"</span>,</span> <span> res_unit <span class="op">=</span> <span class="st">"% AR"</span>,</span> <span> comment <span class="op">=</span> <span class="st">""</span>,</span> <span> date <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.Date</a></span><span class="op">(</span><span class="op">)</span>,</span> <span> optimiser <span class="op">=</span> <span class="st">"IRLS"</span></span> <span><span class="op">)</span></span></code></pre></div> </div> <div id="arguments"> <h2>Arguments</h2> <dl><dt>ds</dt> <dd><p>A named list of datasets in long format as compatible with <code><a href="mkinfit.html">mkinfit</a></code>.</p></dd> <dt>map</dt> <dd><p>A character vector with CAKE compartment names (Parent, A1, ...), named with the names used in the list of datasets.</p></dd> <dt>links</dt> <dd><p>An optional character vector of target compartments, named with the names of the source compartments. In order to make this easier, the names are used as in the datasets supplied.</p></dd> <dt>filename</dt> <dd><p>Where to write the result. Should end in .csf in order to be compatible with CAKE.</p></dd> <dt>path</dt> <dd><p>An optional path to the output file.</p></dd> <dt>overwrite</dt> <dd><p>If TRUE, existing files are overwritten.</p></dd> <dt>study</dt> <dd><p>The name of the study.</p></dd> <dt>description</dt> <dd><p>An optional description.</p></dd> <dt>time_unit</dt> <dd><p>The time unit for the residue data.</p></dd> <dt>res_unit</dt> <dd><p>The unit used for the residues.</p></dd> <dt>comment</dt> <dd><p>An optional comment.</p></dd> <dt>date</dt> <dd><p>The date of file creation.</p></dd> <dt>optimiser</dt> <dd><p>Can be OLS or IRLS.</p></dd> </dl></div> <div id="value"> <h2>Value</h2> <p>The function is called for its side effect.</p> </div> <div id="author"> <h2>Author</h2> <p>Johannes Ranke</p> </div> </div> <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar"> <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2> </nav></div> </div> <footer><div class="copyright"> <p></p><p>Developed by Johannes Ranke.</p> </div> <div class="pkgdown"> <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.6.</p> </div> </footer></div> </body></html>