Export a list of datasets format to a CAKE study file

In addition to the datasets, the pathways in the degradation model can be specified as well.

CAKE_export(
  ds,
  map = c(parent = "Parent"),
  links = NA,
  filename = "CAKE_export.csf",
  path = ".",
  overwrite = FALSE,
  study = "Codlemone aerobic soil degradation",
  description = "",
  time_unit = "days",
  res_unit = "% AR",
  comment = "Created using mkin::CAKE_export",
  date = Sys.Date(),
  optimiser = "IRLS"
)

Arguments

ds	A named list of datasets in long format as compatible with mkinfit.
map	A character vector with CAKE compartment names (Parent, A1, ...), named with the names used in the list of datasets.
links	An optional character vector of target compartments, named with the names of the source compartments. In order to make this easier, the names are used as in the datasets supplied.
filename	Where to write the result. Should end in .csf in order to be compatible with CAKE.
path	An optional path to the output file.
overwrite	If TRUE, existing files are overwritten.
study	The name of the study.
description	An optional description.
time_unit	The time unit for the residue data.
res_unit	The unit used for the residues.
comment	An optional comment.
date	The date of file creation.
optimiser	Can be OLS or IRLS.

Value

The function is called for its side effect.

Author

Johannes Ranke