Main functions Essential functionality
mkinmod	Function to set up a kinetic model with one or more state variables
mkinfit	Fit a kinetic model to data with one or more state variables
mmkin	Fit one or more kinetic models with one or more state variables to one or more datasets
Show results Functions working with mkinfit objects
plot.mkinfit	Plot the observed data and the fitted model of an mkinfit object
summary print	Summary method for class "mkinfit"
mkinresplot	Function to plot residuals stored in an mkin object
mkinparplot	Function to plot the confidence intervals obtained using mkinfit
endpoints	Function to calculate endpoints for further use from kinetic models fitted with mkinfit
mkinerrmin	Calculate the minimum error to assume in order to pass the variance test
Work with mmkin objects Functions working with aggregated results
[.mmkin	Subsetting method for mmkin objects
plot	Plot model fits (observed and fitted) and the residuals for a row or column of an mmkin object
Datasets and known results
FOCUS_2006_datasets	Datasets A to F from the FOCUS Kinetics report from 2006
FOCUS_2006_SFO_ref_A_to_F	Results of fitting the SFO model to Datasets A to F of FOCUS (2006)
FOCUS_2006_FOMC_ref_A_to_F	Results of fitting the FOMC model to Datasets A to F of FOCUS (2006)
FOCUS_2006_HS_ref_A_to_F	Results of fitting the HS model to Datasets A to F of FOCUS (2006)
FOCUS_2006_DFOP_ref_A_to_B	Results of fitting the DFOP model to Datasets A to B of FOCUS (2006)
mccall81_245T	Datasets on aerobic soil metabolism of 2,4,5-T in six soils
schaefer07_complex_case	Metabolism data set used for checking the software quality of KinGUI
synthetic_data_for_UBA_2014	Synthetic datasets for one parent compound with two metabolites
test_data_from_UBA_2014	Three experimental datasets from two water sediment systems and one soil
mkinds	A dataset class for mkin
print	Print mkinds objects
Helper functions
geometric_mean	Calculate the geometric mean
mkinsub	Function to set up a kinetic submodel for one state variable
max_twa_parent	Function to calculate maximum time weighted average concentrations from kinetic models fitted with mkinfit
mkinpredict	Produce predictions from a kinetic model using specific parameters
mkin_wide_to_long	Convert a dataframe with observations over time into long format
mkin_long_to_wide	Convert a dataframe from long to wide format
print	Print mkinmod objects
transform_odeparms backtransform_odeparms	Functions to transform and backtransform kinetic parameters for fitting
ilr invilr	Function to perform isometric log-ratio transformation
sigma_rl	Two component error model of Rocke and Lorenzato
Analytical solutions Parent only model solutions
SFO.solution	Single First-Order kinetics
FOMC.solution	First-Order Multi-Compartment kinetics
DFOP.solution	Double First-Order in Parallel kinetics
SFORB.solution	Single First-Order Reversible Binding kinetics
HS.solution	Hockey-Stick kinetics
IORE.solution	Indeterminate order rate equation kinetics
Generate synthetic datasets
add_err	Add normally distributed errors to simulated kinetic degradation data
Deprecated functions Functions that have been superseeded
mkinplot	Plot the observed data and the fitted model of an mkinfit object