Main functions

Essential functionality

Fit a kinetic model to data with one or more state variables

Function to set up a kinetic model with one or more state variables

Fit one or more kinetic models with one or more state variables to one or more datasets

Show results

Functions working with mkinfit objects

Function to calculate endpoints for further use from kinetic models fitted with mkinfit

Calculate the minimum error to assume in order to pass the variance test

Function to plot the confidence intervals obtained using mkinfit

Function to plot residuals stored in an mkin object

Work with mmkin objects

Functions working with aggregated results

Subsetting method for mmkin objects

Plot model fits (observed and fitted) and the residuals for a row or column of an mmkin object

Datasets and known results

Results of fitting the DFOP model to Datasets A to B of FOCUS (2006)

Results of fitting the FOMC model to Datasets A to F of FOCUS (2006)

Results of fitting the HS model to Datasets A to F of FOCUS (2006)

Results of fitting the SFO model to Datasets A to F of FOCUS (2006)

Datasets on aerobic soil metabolism of 2,4,5-T in six soils

A dataset class for mkin

Print mkinds objects

Synthetic datasets for one parent compound with two metabolites

Helper functions

Calculate the geometric mean

Convert a dataframe from long to wide format

Convert a dataframe with observations over time into long format

Produce predictions from a kinetic model using specific parameters

Function to set up a kinetic submodel for one state variable

Print mkinmod objects

Analytical solutions

Parent only model solutions

Double First-Order in Parallel kinetics

First-Order Multi-Compartment kinetics

Hockey-Stick kinetics

Indeterminate order rate equation kinetics

Single First-Order kinetics

Single First-Order Reversible Binding kinetics

Generate synthetic datasets

Add normally distributed errors to simulated kinetic degradation data

Deprecated functions

Functions that have been superseeded

Plot the observed data and the fitted model of an mkinfit object