Datasets and known results
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FOCUS_2006_datasets
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Datasets A to F from the FOCUS Kinetics report from 2006 |
FOCUS_2006_SFO_ref_A_to_F
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Results of fitting the SFO model to Datasets A to F of FOCUS (2006) |
FOCUS_2006_FOMC_ref_A_to_F
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Results of fitting the FOMC model to Datasets A to F of FOCUS (2006) |
FOCUS_2006_HS_ref_A_to_F
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Results of fitting the HS model to Datasets A to F of FOCUS (2006) |
FOCUS_2006_DFOP_ref_A_to_B
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Results of fitting the DFOP model to Datasets A to B of FOCUS (2006) |
mccall81_245T
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Datasets on aerobic soil metabolism of 2,4,5-T in six soils |
schaefer07_complex_case
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Metabolism data set used for checking the software quality of KinGUI |
synthetic_data_for_UBA_2014
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Synthetic datasets for one parent compound with two metabolites |
test_data_from_UBA_2014
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Three experimental datasets from two water sediment systems and one soil |
mkinds
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A dataset class for mkin |
print(<mkinds>)
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Print mkinds objects |
Helper functions
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geometric_mean()
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Calculate the geometric mean |
mkinsub()
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Function to set up a kinetic submodel for one state variable |
max_twa_parent()
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Function to calculate maximum time weighted average concentrations from kinetic models fitted with mkinfit |
mkinpredict()
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Produce predictions from a kinetic model using specific parameters |
mkin_wide_to_long()
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Convert a dataframe with observations over time into long format |
mkin_long_to_wide()
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Convert a dataframe from long to wide format |
print(<mkinmod>)
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Print mkinmod objects |
transform_odeparms() backtransform_odeparms()
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Functions to transform and backtransform kinetic parameters for fitting |
ilr() invilr()
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Function to perform isometric log-ratio transformation |
sigma_twocomp()
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Two component error model |
CAKE_export()
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Export a list of datasets in wide format to a CAKE study file |