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<h1>Fit one or more kinetic models with one or more state variables to one or more datasets</h1>
</div>
<p>This function calls <code><a href='mkinfit.html'>mkinfit</a></code> on all combinations of models and datasets
specified in its first two arguments.</p>
<pre><span class='fu'>mmkin</span>(<span class='no'>models</span>, <span class='no'>datasets</span>,
<span class='kw'>cores</span> <span class='kw'>=</span> <span class='fu'>round</span>(<span class='fu'>detectCores</span>()/<span class='fl'>2</span>), <span class='kw'>cluster</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, <span class='no'>...</span>)</pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2>
<dl class="dl-horizontal">
<dt>models</dt>
<dd>
Either a character vector of shorthand names ("SFO", "FOMC", "DFOP",
"HS", "SFORB"), or an optionally named list of <code><a href='mkinmod.html'>mkinmod</a></code>
objects.
</dd>
<dt>datasets</dt>
<dd>
An optionally named list of datasets suitable as observed data for
<code><a href='mkinfit.html'>mkinfit</a></code>.
</dd>
<dt>cores</dt>
<dd>
The number of cores to be used for multicore processing. This is only
used when the <code>cluster</code> argument is <code>NULL</code>.
</dd>
<dt>cluster</dt>
<dd>
A cluster as returned by <code>makeCluster</code> to be used for parallel
execution.
</dd>
<dt>&#8230;</dt>
<dd>
Further arguments that will be passed to <code><a href='mkinfit.html'>mkinfit</a></code>.
</dd>
</dl>
<h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
<p>A matrix of <code><a href='mkinfit.html'>mkinfit</a></code> objects that can be indexed using the model
and dataset names as row and column indices.</p>
<h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
<p><code><a href='[.mmkin.html'>[.mmkin</a></code> for subsetting, <code><a href='plot.mmkin.html'>plot.mmkin</a></code> for plotting.</p>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><div class='input'>
<span class='no'>m_synth_SFO_lin</span> <span class='kw'><-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"M1"</span>),
<span class='kw'>M1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"M2"</span>),
<span class='kw'>M2</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>), <span class='kw'>use_of_ff</span> <span class='kw'>=</span> <span class='st'>"max"</span>)</div><div class='output co'>#> <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'>
<span class='no'>m_synth_FOMC_lin</span> <span class='kw'><-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"FOMC"</span>, <span class='st'>"M1"</span>),
<span class='kw'>M1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"M2"</span>),
<span class='kw'>M2</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>), <span class='kw'>use_of_ff</span> <span class='kw'>=</span> <span class='st'>"max"</span>)</div><div class='output co'>#> <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'>
<span class='no'>models</span> <span class='kw'><-</span> <span class='fu'>list</span>(<span class='kw'>SFO_lin</span> <span class='kw'>=</span> <span class='no'>m_synth_SFO_lin</span>, <span class='kw'>FOMC_lin</span> <span class='kw'>=</span> <span class='no'>m_synth_FOMC_lin</span>)
<span class='no'>datasets</span> <span class='kw'><-</span> <span class='fu'>lapply</span>(<span class='no'>synthetic_data_for_UBA_2014</span>[<span class='fl'>1</span>:<span class='fl'>3</span>], <span class='kw'>function</span>(<span class='no'>x</span>) <span class='no'>x</span>$<span class='no'>data</span>)
<span class='fu'>names</span>(<span class='no'>datasets</span>) <span class='kw'><-</span> <span class='fu'>paste</span>(<span class='st'>"Dataset"</span>, <span class='fl'>1</span>:<span class='fl'>3</span>)
<span class='no'>time_default</span> <span class='kw'><-</span> <span class='fu'>system.time</span>(<span class='no'>fits.0</span> <span class='kw'><-</span> <span class='fu'>mmkin</span>(<span class='no'>models</span>, <span class='no'>datasets</span>))
<span class='no'>time_1</span> <span class='kw'><-</span> <span class='fu'>system.time</span>(<span class='no'>fits.1</span> <span class='kw'><-</span> <span class='fu'>mmkin</span>(<span class='no'>models</span>, <span class='no'>datasets</span>, <span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>))</div><div class='output co'>#> Model cost at call 1 : 31054.59
#> Model cost at call 3 : 31054.59
#> Model cost at call 8 : 15089.57
#> Model cost at call 9 : 11464.3
#> Model cost at call 11 : 11464.1
#> Model cost at call 16 : 5723.32
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#> Model cost at call 19 : 5723.304
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#> Model cost at call 24 : 3968.126
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#> Model cost at call 28 : 3968.119
#> Model cost at call 31 : 3416.421
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#> Model cost at call 36 : 3416.418
#> Model cost at call 38 : 866.5564
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#> Model cost at call 45 : 670.4833
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#> Model cost at call 53 : 312.9905
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#> Model cost at call 61 : 287.8916
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#> Model cost at call 164 : 207.6331
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#> Model cost at call 248 : 201.8989
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#> Optimisation by method Port successfully terminated.
#> Model cost at call 1 : 35974.4
#> Model cost at call 3 : 35974.4
#> Model cost at call 5 : 35974.4
#> Model cost at call 7 : 35974.4
#> Model cost at call 9 : 13270.14
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#> Model cost at call 18 : 5356.271
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#> Model cost at call 27 : 1507.839
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#> Model cost at call 44 : 328.9337
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#> Model cost at call 276 : 207.896
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#> Model cost at call 342 : 201.8249
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#> Model cost at call 529 : 201.5169
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#> Optimisation by method Port successfully terminated.
#> Model cost at call 1 : 30689.89
#> Model cost at call 3 : 30689.89
#> Model cost at call 8 : 16294.04
#> Model cost at call 9 : 12699.33
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#> Model cost at call 106 : 1113.955
#> Model cost at call 108 : 1113.955
#> Model cost at call 112 : 1113.955
#> Model cost at call 113 : 1113.03
#> Model cost at call 115 : 1113.03
#> Model cost at call 120 : 1111.643
#> Model cost at call 122 : 1111.643
#> Model cost at call 127 : 1109.657
#> Model cost at call 129 : 1109.657
#> Model cost at call 131 : 1109.657
#> Model cost at call 134 : 1106.725
#> Model cost at call 136 : 1106.725
#> Model cost at call 137 : 1106.725
#> Model cost at call 142 : 1106.005
#> Model cost at call 144 : 1106.005
#> Model cost at call 145 : 1106.005
#> Model cost at call 147 : 1106.005
#> Model cost at call 149 : 1105.268
#> Model cost at call 151 : 1105.268
#> Model cost at call 153 : 1105.268
#> Model cost at call 156 : 1104.247
#> Model cost at call 158 : 1104.247
#> Model cost at call 159 : 1104.247
#> Model cost at call 161 : 1104.247
#> Model cost at call 163 : 1103.813
#> Model cost at call 165 : 1103.813
#> Model cost at call 167 : 1103.813
#> Model cost at call 170 : 1103.075
#> Model cost at call 172 : 1103.075
#> Model cost at call 173 : 1103.075
#> Model cost at call 177 : 1102.447
#> Model cost at call 179 : 1102.447
#> Model cost at call 180 : 1102.447
#> Model cost at call 183 : 1102.447
#> Model cost at call 184 : 1102.038
#> Model cost at call 185 : 1101.712
#> Model cost at call 186 : 1101.337
#> Model cost at call 188 : 1101.337
#> Model cost at call 193 : 1100.37
#> Model cost at call 195 : 1100.37
#> Model cost at call 197 : 1100.37
#> Model cost at call 200 : 1099.46
#> Model cost at call 202 : 1099.46
#> Model cost at call 207 : 1099.262
#> Model cost at call 209 : 1099.262
#> Model cost at call 211 : 1099.262
#> Model cost at call 212 : 1099.261
#> Model cost at call 214 : 1099.227
#> Model cost at call 216 : 1099.227
#> Model cost at call 217 : 1099.227
#> Model cost at call 218 : 1099.227
#> Model cost at call 221 : 1098.331
#> Model cost at call 223 : 1098.331
#> Model cost at call 224 : 1098.331
#> Model cost at call 230 : 1098.24
#> Model cost at call 235 : 1098.24
#> Model cost at call 236 : 1098.24
#> Model cost at call 238 : 1098.231
#> Model cost at call 240 : 1098.231
#> Model cost at call 245 : 1098.228
#> Model cost at call 247 : 1098.228
#> Model cost at call 252 : 1098.221
#> Model cost at call 254 : 1098.221
#> Model cost at call 255 : 1098.221
#> Model cost at call 258 : 1098.221
#> Model cost at call 261 : 1098.214
#> Model cost at call 263 : 1098.214
#> Model cost at call 268 : 1098.204
#> Model cost at call 269 : 1098.196
#> Model cost at call 270 : 1098.187
#> Model cost at call 272 : 1098.187
#> Model cost at call 273 : 1098.187
#> Model cost at call 279 : 1098.181
#> Model cost at call 281 : 1098.181
#> Model cost at call 282 : 1098.181
#> Model cost at call 284 : 1098.181
#> Model cost at call 285 : 1098.181
#> Model cost at call 287 : 1098.172
#> Model cost at call 291 : 1098.172
#> Model cost at call 293 : 1098.172
#> Model cost at call 294 : 1098.169
#> Model cost at call 295 : 1098.169
#> Model cost at call 296 : 1098.169
#> Model cost at call 301 : 1098.169
#> Model cost at call 305 : 1098.169
#> Model cost at call 306 : 1098.169
#> Model cost at call 309 : 1098.169
#> Model cost at call 314 : 1098.169
#> Model cost at call 318 : 1098.169
#> Model cost at call 319 : 1098.169
#> Model cost at call 321 : 1098.169
#> Model cost at call 324 : 1098.169
#> Model cost at call 325 : 1098.169
#> Model cost at call 331 : 1098.169
#> Model cost at call 333 : 1098.169
#> Model cost at call 336 : 1098.169
#> Model cost at call 342 : 1098.169
#> Model cost at call 344 : 1098.169
#> Model cost at call 348 : 1098.169
#> Model cost at call 352 : 1098.169
#> Model cost at call 357 : 1098.169
#> Model cost at call 370 : 1098.169
#> Model cost at call 385 : 1098.169
#> Model cost at call 386 : 1098.169
#> Optimisation by method Port successfully terminated.
#> Model cost at call 1 : 34499.23
#> Model cost at call 3 : 34499.23
#> Model cost at call 5 : 34499.23
#> Model cost at call 7 : 34499.23
#> Model cost at call 9 : 14274.95
#> Model cost at call 10 : 14162.89
#> Model cost at call 14 : 14162.68
#> Model cost at call 18 : 13341.49
#> Model cost at call 19 : 13341.48
#> Model cost at call 20 : 13341.47
#> Model cost at call 22 : 13341.44
#> Model cost at call 27 : 10055.95
#> Model cost at call 28 : 10055.95
#> Model cost at call 30 : 10055.95
#> Model cost at call 35 : 7732.384
#> Model cost at call 36 : 7732.381
#> Model cost at call 39 : 7732.381
#> Model cost at call 44 : 6325.124
#> Model cost at call 45 : 6325.122
#> Model cost at call 47 : 6325.117
#> Model cost at call 52 : 3732.612
#> Model cost at call 54 : 3732.611
#> Model cost at call 61 : 1371.768
#> Model cost at call 64 : 1371.768
#> Model cost at call 67 : 1371.768
#> Model cost at call 70 : 1302.633
#> Model cost at call 74 : 1302.633
#> Model cost at call 75 : 1302.633
#> Model cost at call 78 : 1298.854
#> Model cost at call 82 : 1298.854
#> Model cost at call 84 : 1298.854
#> Model cost at call 86 : 1245.775
#> Model cost at call 91 : 1245.775
#> Model cost at call 94 : 1230.679
#> Model cost at call 96 : 1230.679
#> Model cost at call 100 : 1230.679
#> Model cost at call 103 : 1227.471
#> Model cost at call 105 : 1227.471
#> Model cost at call 109 : 1227.471
#> Model cost at call 111 : 1225.318
#> Model cost at call 113 : 1225.318
#> Model cost at call 117 : 1225.318
#> Model cost at call 118 : 1225.318
#> Model cost at call 119 : 1221.478
#> Model cost at call 121 : 1221.478
#> Model cost at call 127 : 1214.191
#> Model cost at call 128 : 1203.986
#> Model cost at call 129 : 1164.433
#> Model cost at call 135 : 1164.433
#> Model cost at call 140 : 1158.843
#> Model cost at call 145 : 1158.843
#> Model cost at call 148 : 1156.585
#> Model cost at call 154 : 1156.585
#> Model cost at call 156 : 1155.177
#> Model cost at call 159 : 1155.177
#> Model cost at call 161 : 1155.176
#> Model cost at call 164 : 1151.603
#> Model cost at call 166 : 1151.603
#> Model cost at call 167 : 1151.603
#> Model cost at call 169 : 1151.603
#> Model cost at call 173 : 1150.467
#> Model cost at call 175 : 1150.467
#> Model cost at call 176 : 1150.467
#> Model cost at call 181 : 1150.117
#> Model cost at call 184 : 1150.117
#> Model cost at call 185 : 1150.117
#> Model cost at call 187 : 1150.117
#> Model cost at call 188 : 1150.117
#> Model cost at call 189 : 1149.03
#> Model cost at call 193 : 1149.03
#> Model cost at call 195 : 1149.03
#> Model cost at call 197 : 1148.468
#> Model cost at call 199 : 1148.468
#> Model cost at call 205 : 1147.297
#> Model cost at call 207 : 1147.297
#> Model cost at call 211 : 1147.297
#> Model cost at call 213 : 1146.841
#> Model cost at call 216 : 1146.841
#> Model cost at call 217 : 1146.841
#> Model cost at call 219 : 1146.841
#> Model cost at call 221 : 1144.548
#> Model cost at call 223 : 1144.548
#> Model cost at call 229 : 1143.258
#> Model cost at call 231 : 1143.258
#> Model cost at call 237 : 1141.772
#> Model cost at call 239 : 1141.772
#> Model cost at call 240 : 1141.772
#> Model cost at call 241 : 1141.772
#> Model cost at call 243 : 1141.772
#> Model cost at call 245 : 1140.849
#> Model cost at call 251 : 1140.849
#> Model cost at call 252 : 1140.849
#> Model cost at call 253 : 1139.456
#> Model cost at call 259 : 1139.456
#> Model cost at call 261 : 1137.678
#> Model cost at call 263 : 1137.678
#> Model cost at call 269 : 1135.358
#> Model cost at call 270 : 1134.128
#> Model cost at call 272 : 1134.128
#> Model cost at call 280 : 1133.342
#> Model cost at call 283 : 1133.342
#> Model cost at call 286 : 1133.342
#> Model cost at call 288 : 1133.229
#> Model cost at call 292 : 1133.229
#> Model cost at call 294 : 1133.229
#> Model cost at call 295 : 1133.229
#> Model cost at call 296 : 1132.641
#> Model cost at call 300 : 1132.641
#> Model cost at call 304 : 1132.126
#> Model cost at call 310 : 1132.126
#> Model cost at call 312 : 1131.169
#> Model cost at call 318 : 1131.169
#> Model cost at call 320 : 1130.405
#> Model cost at call 324 : 1130.405
#> Model cost at call 328 : 1129.635
#> Model cost at call 330 : 1129.635
#> Model cost at call 332 : 1129.635
#> Model cost at call 334 : 1129.635
#> Model cost at call 336 : 1128.526
#> Model cost at call 338 : 1128.526
#> Model cost at call 343 : 1128.526
#> Model cost at call 344 : 1127.498
#> Model cost at call 346 : 1127.498
#> Model cost at call 350 : 1127.498
#> Model cost at call 352 : 1126.06
#> Model cost at call 353 : 1124.911
#> Model cost at call 356 : 1124.911
#> Model cost at call 362 : 1120.309
#> Model cost at call 366 : 1120.309
#> Model cost at call 368 : 1120.308
#> Model cost at call 369 : 1120.308
#> Model cost at call 370 : 1117.687
#> Model cost at call 374 : 1117.687
#> Model cost at call 375 : 1117.687
#> Model cost at call 378 : 1112.013
#> Model cost at call 379 : 1112.013
#> Model cost at call 381 : 1112.013
#> Model cost at call 386 : 1108.648
#> Model cost at call 387 : 1108.251
#> Model cost at call 388 : 1108.251
#> Model cost at call 391 : 1108.251
#> Model cost at call 392 : 1108.251
#> Model cost at call 395 : 1104.73
#> Model cost at call 396 : 1104.73
#> Model cost at call 397 : 1104.73
#> Model cost at call 403 : 1103.277
#> Model cost at call 404 : 1103.277
#> Model cost at call 411 : 1101.351
#> Model cost at call 414 : 1101.351
#> Model cost at call 416 : 1101.351
#> Model cost at call 417 : 1101.351
#> Model cost at call 419 : 1100.36
#> Model cost at call 420 : 1100.36
#> Model cost at call 421 : 1100.36
#> Model cost at call 427 : 1099.596
#> Model cost at call 431 : 1099.596
#> Model cost at call 432 : 1099.596
#> Model cost at call 435 : 1099.029
#> Model cost at call 437 : 1099.029
#> Model cost at call 444 : 1098.722
#> Model cost at call 447 : 1098.722
#> Model cost at call 448 : 1098.722
#> Model cost at call 453 : 1098.441
#> Model cost at call 455 : 1098.441
#> Model cost at call 458 : 1098.441
#> Model cost at call 463 : 1098.314
#> Model cost at call 464 : 1098.314
#> Model cost at call 469 : 1098.314
#> Model cost at call 471 : 1098.314
#> Model cost at call 475 : 1098.245
#> Model cost at call 477 : 1098.245
#> Model cost at call 480 : 1098.245
#> Model cost at call 486 : 1098.209
#> Model cost at call 487 : 1098.209
#> Model cost at call 489 : 1098.209
#> Model cost at call 493 : 1098.209
#> Model cost at call 505 : 1098.209
#> Model cost at call 506 : 1098.209
#> Model cost at call 510 : 1098.209
#> Model cost at call 518 : 1098.209
#> Model cost at call 519 : 1098.209
#> Model cost at call 522 : 1098.209
#> Model cost at call 526 : 1098.209
#> Model cost at call 528 : 1098.209
#> Model cost at call 530 : 1098.209
#> Model cost at call 533 : 1098.209
#> Model cost at call 534 : 1098.209
#> Model cost at call 536 : 1098.209
#> Model cost at call 542 : 1098.209
#> Model cost at call 549 : 1098.207
#> Model cost at call 551 : 1098.207
#> Model cost at call 552 : 1098.207
#> Model cost at call 555 : 1098.207
#> Model cost at call 564 : 1098.205
#> Model cost at call 566 : 1098.205
#> Model cost at call 567 : 1098.205
#> Model cost at call 570 : 1098.205
#> Model cost at call 579 : 1098.2
#> Model cost at call 580 : 1098.191
#> Model cost at call 581 : 1098.191
#> Model cost at call 583 : 1098.191
#> Model cost at call 586 : 1098.191
#> Model cost at call 587 : 1098.191
#> Model cost at call 589 : 1098.191
#> Model cost at call 595 : 1098.186
#> Model cost at call 596 : 1098.186
#> Model cost at call 606 : 1098.18
#> Model cost at call 609 : 1098.18
#> Model cost at call 610 : 1098.18
#> Model cost at call 616 : 1098.177
#> Model cost at call 619 : 1098.177
#> Model cost at call 620 : 1098.177
#> Model cost at call 627 : 1098.173
#> Model cost at call 630 : 1098.173
#> Model cost at call 631 : 1098.173
#> Model cost at call 636 : 1098.173
#> Model cost at call 641 : 1098.172
#> Model cost at call 642 : 1098.172
#> Model cost at call 653 : 1098.172
#> Model cost at call 654 : 1098.172
#> Model cost at call 664 : 1098.172
#> Model cost at call 669 : 1098.172
#> Model cost at call 671 : 1098.172
#> Model cost at call 675 : 1098.172
#> Model cost at call 678 : 1098.172
#> Model cost at call 680 : 1098.172
#> Model cost at call 683 : 1098.172
#> Model cost at call 684 : 1098.172
#> Model cost at call 686 : 1098.172
#> Model cost at call 690 : 1098.172
#> Model cost at call 702 : 1098.172
#> Model cost at call 704 : 1098.172
#> Model cost at call 708 : 1098.172
#> Model cost at call 721 : 1098.172
#> Model cost at call 723 : 1098.172
#> Model cost at call 736 : 1098.172
#> Model cost at call 738 : 1098.172
#> Model cost at call 751 : 1098.172
#> Model cost at call 753 : 1098.172
#> Model cost at call 766 : 1098.172
#> Model cost at call 767 : 1098.172
#> Model cost at call 768 : 1098.172
#> Model cost at call 770 : 1098.172
#> Model cost at call 783 : 1098.172
#> Model cost at call 784 : 1098.172
#> Model cost at call 785 : 1098.172
#> Model cost at call 799 : 1098.172
#> Model cost at call 800 : 1098.172
#> Model cost at call 814 : 1098.172
#> Model cost at call 815 : 1098.172
#> Model cost at call 816 : 1098.172
#> Model cost at call 822 : 1098.172
#> Model cost at call 830 : 1098.172
#> Model cost at call 831 : 1098.172
#> Model cost at call 834 : 1098.172
#> Model cost at call 845 : 1098.172
#> Model cost at call 846 : 1098.172
#> Model cost at call 849 : 1098.172
#> Model cost at call 860 : 1098.171
#> Model cost at call 861 : 1098.171
#> Model cost at call 864 : 1098.171
#> Model cost at call 875 : 1098.171
#> Model cost at call 876 : 1098.171
#> Model cost at call 879 : 1098.171
#> Model cost at call 890 : 1098.17
#> Model cost at call 891 : 1098.17
#> Model cost at call 894 : 1098.17
#> Model cost at call 904 : 1098.169
#> Model cost at call 905 : 1098.169
#> Model cost at call 908 : 1098.169
#> Model cost at call 909 : 1098.169
#> Model cost at call 919 : 1098.169
#> Model cost at call 921 : 1098.169
#> Model cost at call 931 : 1098.169
#> Model cost at call 932 : 1098.169
#> Model cost at call 934 : 1098.169
#> Model cost at call 936 : 1098.169
#> Model cost at call 937 : 1098.169
#> Model cost at call 944 : 1098.169
#> Model cost at call 947 : 1098.169
#> Model cost at call 949 : 1098.169
#> Model cost at call 951 : 1098.169
#> Model cost at call 952 : 1098.169
#> Model cost at call 954 : 1098.169
#> Model cost at call 964 : 1098.169
#> Model cost at call 967 : 1098.169
#> Model cost at call 969 : 1098.169
#> Model cost at call 982 : 1098.169
#> Model cost at call 1017 : 1098.169
#> Model cost at call 1018 : 1098.169
#> Model cost at call 1022 : 1098.169
#> Model cost at call 1029 : 1098.169
#> Model cost at call 1033 : 1098.169
#> Model cost at call 1038 : 1098.169
#> Model cost at call 1048 : 1098.169
#> Model cost at call 1049 : 1098.169
#> Model cost at call 1055 : 1098.169
#> Model cost at call 1063 : 1098.169
#> Model cost at call 1074 : 1098.169
#> Model cost at call 1079 : 1098.169
#> Model cost at call 1089 : 1098.169
#> Model cost at call 1120 : 1098.169
#> Model cost at call 1124 : 1098.169
#> Model cost at call 1139 : 1098.169
#> Model cost at call 1154 : 1098.169
#> Model cost at call 1170 : 1098.169
#> Model cost at call 1185 : 1098.169
#> Model cost at call 1200 : 1098.169
#> Model cost at call 1215 : 1098.169
#> Model cost at call 1231 : 1098.169
#> Model cost at call 1246 : 1098.169
#> Model cost at call 1247 : 1098.169
#> Model cost at call 1248 : 1098.169
#> Model cost at call 1258 : 1098.169
#> Model cost at call 1263 : 1098.169
#> Model cost at call 1278 : 1098.169
#> Model cost at call 1295 : 1098.169
#> Model cost at call 1296 : 1098.169
#> Model cost at call 1297 : 1098.169
#> Model cost at call 1298 : 1098.169
#> Model cost at call 1306 : 1098.169
#> Model cost at call 1308 : 1098.169
#> Optimisation by method Port successfully terminated.
#> Model cost at call 1 : 31389.19
#> Model cost at call 3 : 31389.19
#> Model cost at call 8 : 15003.41
#> Model cost at call 9 : 11136.21
#> Model cost at call 11 : 11135.87
#> Model cost at call 16 : 4800.182
#> Model cost at call 17 : 4800.181
#> Model cost at call 19 : 4800.163
#> Model cost at call 24 : 3036.068
#> Model cost at call 25 : 3036.068
#> Model cost at call 26 : 3036.052
#> Model cost at call 31 : 1361.371
#> Model cost at call 33 : 1361.371
#> Model cost at call 40 : 494.6738
#> Model cost at call 41 : 494.6736
#> Model cost at call 45 : 494.6734
#> Model cost at call 48 : 260.2631
#> Model cost at call 49 : 260.2629
#> Model cost at call 55 : 248.3035
#> Model cost at call 56 : 248.3034
#> Model cost at call 57 : 248.3023
#> Model cost at call 62 : 171.6337
#> Model cost at call 63 : 171.6337
#> Model cost at call 70 : 167.3473
#> Model cost at call 72 : 167.3473
#> Model cost at call 73 : 167.3473
#> Model cost at call 78 : 165.9868
#> Model cost at call 80 : 165.9868
#> Model cost at call 83 : 165.9868
#> Model cost at call 85 : 165.2025
#> Model cost at call 87 : 165.2024
#> Model cost at call 92 : 163.5932
#> Model cost at call 94 : 163.5932
#> Model cost at call 96 : 163.5932
#> Model cost at call 99 : 159.4289
#> Model cost at call 100 : 147.5939
#> Model cost at call 105 : 147.5939
#> Model cost at call 108 : 139.3925
#> Model cost at call 113 : 139.3925
#> Model cost at call 115 : 139.392
#> Model cost at call 116 : 123.9799
#> Model cost at call 117 : 123.9798
#> Model cost at call 118 : 123.9795
#> Model cost at call 124 : 103.8653
#> Model cost at call 125 : 103.8653
#> Model cost at call 126 : 103.8652
#> Model cost at call 131 : 96.14276
#> Model cost at call 134 : 96.14275
#> Model cost at call 135 : 96.14274
#> Model cost at call 139 : 95.96056
#> Model cost at call 141 : 95.96056
#> Model cost at call 142 : 95.96056
#> Model cost at call 145 : 95.96056
#> Model cost at call 146 : 95.90851
#> Model cost at call 148 : 95.9085
#> Model cost at call 153 : 95.84671
#> Model cost at call 155 : 95.8467
#> Model cost at call 161 : 95.82479
#> Model cost at call 163 : 95.82479
#> Model cost at call 166 : 95.82479
#> Model cost at call 168 : 95.81938
#> Model cost at call 170 : 95.81938
#> Model cost at call 174 : 95.81938
#> Model cost at call 175 : 95.81558
#> Model cost at call 177 : 95.81558
#> Model cost at call 178 : 95.81558
#> Model cost at call 180 : 95.81558
#> Model cost at call 181 : 95.81558
#> Model cost at call 183 : 95.81558
#> Model cost at call 184 : 95.8118
#> Model cost at call 186 : 95.8118
#> Model cost at call 188 : 95.8118
#> Model cost at call 191 : 95.80885
#> Model cost at call 192 : 95.80353
#> Model cost at call 193 : 95.78121
#> Model cost at call 194 : 95.72164
#> Model cost at call 197 : 95.72164
#> Model cost at call 201 : 95.72163
#> Model cost at call 206 : 95.71206
#> Model cost at call 208 : 95.71205
#> Model cost at call 213 : 95.70874
#> Model cost at call 215 : 95.70874
#> Model cost at call 219 : 95.70874
#> Model cost at call 221 : 95.70751
#> Model cost at call 222 : 95.70404
#> Model cost at call 223 : 95.69259
#> Model cost at call 224 : 95.68092
#> Model cost at call 226 : 95.68092
#> Model cost at call 227 : 95.68092
#> Model cost at call 233 : 95.67595
#> Model cost at call 235 : 95.67595
#> Model cost at call 236 : 95.67595
#> Model cost at call 242 : 95.67219
#> Model cost at call 244 : 95.67219
#> Model cost at call 245 : 95.67219
#> Model cost at call 249 : 95.66939
#> Model cost at call 251 : 95.66939
#> Model cost at call 253 : 95.66939
#> Model cost at call 254 : 95.66939
#> Model cost at call 256 : 95.66904
#> Model cost at call 257 : 95.66904
#> Model cost at call 260 : 95.66904
#> Model cost at call 265 : 95.66857
#> Model cost at call 267 : 95.66856
#> Model cost at call 273 : 95.66822
#> Model cost at call 275 : 95.66822
#> Model cost at call 276 : 95.66822
#> Model cost at call 282 : 95.66809
#> Model cost at call 283 : 95.66809
#> Model cost at call 291 : 95.66805
#> Model cost at call 293 : 95.66805
#> Model cost at call 295 : 95.66805
#> Model cost at call 297 : 95.66805
#> Model cost at call 298 : 95.66805
#> Model cost at call 302 : 95.66805
#> Model cost at call 304 : 95.66805
#> Model cost at call 306 : 95.66805
#> Model cost at call 309 : 95.66805
#> Model cost at call 314 : 95.66805
#> Model cost at call 315 : 95.66805
#> Model cost at call 328 : 95.66805
#> Optimisation by method Port successfully terminated.
#> Model cost at call 1 : 36597.78
#> Model cost at call 3 : 36597.78
#> Model cost at call 5 : 36597.78
#> Model cost at call 7 : 36597.78
#> Model cost at call 9 : 13188.26
#> Model cost at call 10 : 12648.25
#> Model cost at call 14 : 12648.13
#> Model cost at call 16 : 12647.92
#> Model cost at call 18 : 6148.715
#> Model cost at call 19 : 6148.712
#> Model cost at call 20 : 6148.695
#> Model cost at call 22 : 6148.683
#> Model cost at call 27 : 1490.597
#> Model cost at call 33 : 1490.597
#> Model cost at call 35 : 594.2031
#> Model cost at call 36 : 594.2023
#> Model cost at call 38 : 594.201
#> Model cost at call 40 : 594.2009
#> Model cost at call 44 : 230.6504
#> Model cost at call 45 : 230.6503
#> Model cost at call 48 : 230.6503
#> Model cost at call 50 : 230.6495
#> Model cost at call 51 : 230.6494
#> Model cost at call 53 : 186.2336
#> Model cost at call 57 : 186.2336
#> Model cost at call 59 : 186.2336
#> Model cost at call 60 : 186.2336
#> Model cost at call 62 : 181.3507
#> Model cost at call 66 : 181.3507
#> Model cost at call 70 : 180.733
#> Model cost at call 74 : 180.733
#> Model cost at call 76 : 180.7329
#> Model cost at call 77 : 180.7329
#> Model cost at call 78 : 175.5254
#> Model cost at call 80 : 175.5253
#> Model cost at call 86 : 173.1139
#> Model cost at call 88 : 173.1139
#> Model cost at call 94 : 168.0503
#> Model cost at call 96 : 168.0502
#> Model cost at call 102 : 164.9084
#> Model cost at call 104 : 164.9084
#> Model cost at call 105 : 164.9084
#> Model cost at call 110 : 159.7912
#> Model cost at call 112 : 159.7912
#> Model cost at call 113 : 159.7912
#> Model cost at call 116 : 159.7911
#> Model cost at call 117 : 159.7911
#> Model cost at call 118 : 158.6003
#> Model cost at call 122 : 158.6002
#> Model cost at call 124 : 158.6002
#> Model cost at call 126 : 150.4132
#> Model cost at call 132 : 150.4132
#> Model cost at call 133 : 150.4132
#> Model cost at call 134 : 146.5123
#> Model cost at call 140 : 146.5122
#> Model cost at call 142 : 136.6018
#> Model cost at call 145 : 136.6018
#> Model cost at call 149 : 136.6018
#> Model cost at call 150 : 133.91
#> Model cost at call 153 : 133.91
#> Model cost at call 155 : 133.91
#> Model cost at call 156 : 133.91
#> Model cost at call 158 : 124.7878
#> Model cost at call 162 : 124.7878
#> Model cost at call 163 : 124.7878
#> Model cost at call 167 : 124.2615
#> Model cost at call 169 : 124.2614
#> Model cost at call 170 : 124.2614
#> Model cost at call 175 : 123.2425
#> Model cost at call 179 : 123.2425
#> Model cost at call 180 : 123.2425
#> Model cost at call 181 : 123.2425
#> Model cost at call 182 : 123.2425
#> Model cost at call 183 : 120.7214
#> Model cost at call 185 : 120.7214
#> Model cost at call 191 : 119.2706
#> Model cost at call 192 : 117.872
#> Model cost at call 193 : 114.6257
#> Model cost at call 198 : 114.6257
#> Model cost at call 201 : 111.8985
#> Model cost at call 203 : 111.8985
#> Model cost at call 206 : 111.8984
#> Model cost at call 209 : 111.6987
#> Model cost at call 212 : 111.6987
#> Model cost at call 213 : 111.6986
#> Model cost at call 217 : 107.9995
#> Model cost at call 219 : 107.9995
#> Model cost at call 225 : 106.1322
#> Model cost at call 226 : 104.6907
#> Model cost at call 227 : 104.6316
#> Model cost at call 229 : 104.6316
#> Model cost at call 232 : 104.6315
#> Model cost at call 239 : 103.3421
#> Model cost at call 245 : 103.3421
#> Model cost at call 246 : 103.3421
#> Model cost at call 247 : 103.1772
#> Model cost at call 248 : 103.1772
#> Model cost at call 249 : 103.1772
#> Model cost at call 250 : 103.1772
#> Model cost at call 253 : 103.1772
#> Model cost at call 255 : 102.8623
#> Model cost at call 256 : 102.8623
#> Model cost at call 262 : 102.8623
#> Model cost at call 263 : 102.6013
#> Model cost at call 266 : 102.6013
#> Model cost at call 271 : 102.0341
#> Model cost at call 272 : 101.25
#> Model cost at call 273 : 99.17557
#> Model cost at call 274 : 99.17556
#> Model cost at call 282 : 99.06481
#> Model cost at call 284 : 99.06479
#> Model cost at call 290 : 98.57515
#> Model cost at call 294 : 98.57514
#> Model cost at call 296 : 98.57514
#> Model cost at call 298 : 98.05781
#> Model cost at call 304 : 98.05781
#> Model cost at call 305 : 98.05781
#> Model cost at call 306 : 97.81766
#> Model cost at call 307 : 97.63972
#> Model cost at call 308 : 97.63971
#> Model cost at call 315 : 97.15447
#> Model cost at call 317 : 97.15447
#> Model cost at call 321 : 97.15446
#> Model cost at call 323 : 96.25231
#> Model cost at call 324 : 96.25231
#> Model cost at call 328 : 96.25231
#> Model cost at call 331 : 95.48051
#> Model cost at call 334 : 95.4805
#> Model cost at call 339 : 95.08754
#> Model cost at call 341 : 95.08754
#> Model cost at call 347 : 94.9916
#> Model cost at call 348 : 94.9916
#> Model cost at call 350 : 94.9916
#> Model cost at call 355 : 94.93856
#> Model cost at call 356 : 94.93856
#> Model cost at call 357 : 94.93856
#> Model cost at call 363 : 94.92067
#> Model cost at call 366 : 94.92067
#> Model cost at call 367 : 94.92067
#> Model cost at call 369 : 94.92067
#> Model cost at call 370 : 94.92067
#> Model cost at call 371 : 94.91762
#> Model cost at call 372 : 94.91762
#> Model cost at call 373 : 94.91762
#> Model cost at call 379 : 94.91744
#> Model cost at call 380 : 94.91744
#> Model cost at call 385 : 94.91744
#> Model cost at call 387 : 94.91744
#> Model cost at call 393 : 94.91743
#> Model cost at call 394 : 94.91743
#> Model cost at call 404 : 94.91743
#> Model cost at call 407 : 94.91743
#> Model cost at call 408 : 94.91743
#> Model cost at call 423 : 94.91743
#> Model cost at call 442 : 94.91743
#> Model cost at call 446 : 94.91743
#> Model cost at call 447 : 94.91743
#> Optimisation by method Port successfully terminated.</div><div class='input'>
<span class='no'>time_default</span></div><div class='output co'>#> user system elapsed
#> 16.180 0.132 9.130 </div><div class='input'><span class='no'>time_1</span></div><div class='output co'>#> user system elapsed
#> 22.856 0.000 22.858 </div><div class='input'>
<span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fits</span><span class='kw'>[[</span><span class='st'>"SFO_lin"</span>, <span class='fl'>2</span>]])</div><div class='output co'>#> <span class='error'>Error in endpoints(fits[["SFO_lin", 2]]): Objekt 'fits' nicht gefunden</span></div><div class='input'>
<span class='co'># Plot.mkinfit handles rows or columns of mmkin result objects</span>
<span class='fu'>plot</span>(<span class='no'>fits.0</span>[<span class='fl'>1</span>, ])</div><img src='mmkin-14.png' alt='' width='540' height='400' /><div class='input'><span class='fu'>plot</span>(<span class='no'>fits.0</span>[<span class='fl'>1</span>, ], <span class='kw'>obs_var</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"M1"</span>, <span class='st'>"M2"</span>))</div><img src='mmkin-16.png' alt='' width='540' height='400' /><div class='input'><span class='fu'>plot</span>(<span class='no'>fits.0</span>[, <span class='fl'>1</span>])</div><img src='mmkin-18.png' alt='' width='540' height='400' /><div class='input'><span class='co'># Use double brackets to extract a single mkinfit object, which will be plotted</span>
<span class='co'># by plot.mkinfit</span>
<span class='fu'>plot</span>(<span class='no'>fits.0</span><span class='kw'>[[</span><span class='fl'>1</span>, <span class='fl'>1</span>]], <span class='kw'>sep_obs</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>show_residuals</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>show_errmin</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><img src='mmkin-20.png' alt='' width='540' height='400' /><div class='input'><span class='co'># Plotting with mmkin (single brackets, extracting an mmkin object) does not</span>
<span class='co'># allow to plot the observed variables separately</span>
<span class='fu'>plot</span>(<span class='no'>fits.0</span>[<span class='fl'>1</span>, <span class='fl'>1</span>])</div><img src='mmkin-22.png' alt='' width='540' height='400' /><div class='input'>
</div></pre>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
<h2>Contents</h2>
<ul class="nav nav-pills nav-stacked">
<li><a href="#arguments">Arguments</a></li>
<li><a href="#value">Value</a></li>
<li><a href="#see-also">See also</a></li>
<li><a href="#examples">Examples</a></li>
</ul>
<h2>Author</h2>
Johannes Ranke
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<div class="copyright">
<p>Developed by Johannes Ranke.</p>
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<p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
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