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    <h1>Plot a fitted nonlinear mixed model obtained via an mmkin row object</h1>
    <small class="dont-index">Source: <a href='https://github.com/jranke/mkin/blob/master/R/plot.nlme.mmkin.R'><code>R/plot.nlme.mmkin.R</code></a></small>
    <div class="hidden name"><code>plot.nlme.mmkin.Rd</code></div>
    </div>

    <div class="ref-description">
    <p>Plot a fitted nonlinear mixed model obtained via an mmkin row object</p>
    </div>

    <pre class="usage"><span class='co'># S3 method for nlme.mmkin</span>
<span class='fu'><a href='https://rdrr.io/r/graphics/plot.default.html'>plot</a></span><span class='op'>(</span>
  <span class='va'>x</span>,
  i <span class='op'>=</span> <span class='fl'>1</span><span class='op'>:</span><span class='fu'><a href='https://rdrr.io/r/base/nrow.html'>ncol</a></span><span class='op'>(</span><span class='va'>x</span><span class='op'>$</span><span class='va'>mmkin_orig</span><span class='op'>)</span>,
  main <span class='op'>=</span> <span class='st'>"auto"</span>,
  legends <span class='op'>=</span> <span class='fl'>1</span>,
  resplot <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"time"</span>, <span class='st'>"errmod"</span><span class='op'>)</span>,
  standardized <span class='op'>=</span> <span class='cn'>FALSE</span>,
  show_errmin <span class='op'>=</span> <span class='cn'>TRUE</span>,
  errmin_var <span class='op'>=</span> <span class='st'>"All data"</span>,
  errmin_digits <span class='op'>=</span> <span class='fl'>3</span>,
  cex <span class='op'>=</span> <span class='fl'>0.7</span>,
  rel.height.middle <span class='op'>=</span> <span class='fl'>0.9</span>,
  ymax <span class='op'>=</span> <span class='st'>"auto"</span>,
  <span class='va'>...</span>
<span class='op'>)</span></pre>

    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
    <table class="ref-arguments">
    <colgroup><col class="name" /><col class="desc" /></colgroup>
    <tr>
      <th>x</th>
      <td><p>An object of class <code><a href='nlme.mmkin.html'>nlme.mmkin</a></code></p></td>
    </tr>
    <tr>
      <th>i</th>
      <td><p>A numeric index to select datasets for which to plot the nlme fit,
in case plots get too large</p></td>
    </tr>
    <tr>
      <th>main</th>
      <td><p>The main title placed on the outer margin of the plot.</p></td>
    </tr>
    <tr>
      <th>legends</th>
      <td><p>An index for the fits for which legends should be shown.</p></td>
    </tr>
    <tr>
      <th>resplot</th>
      <td><p>Should the residuals plotted against time, using
<code><a href='mkinresplot.html'>mkinresplot</a></code>, or as squared residuals against predicted
values, with the error model, using <code><a href='mkinerrplot.html'>mkinerrplot</a></code>.</p></td>
    </tr>
    <tr>
      <th>standardized</th>
      <td><p>Should the residuals be standardized? This option
is passed to <code><a href='mkinresplot.html'>mkinresplot</a></code>, it only takes effect if
<code>resplot = "time"</code>.</p></td>
    </tr>
    <tr>
      <th>show_errmin</th>
      <td><p>Should the chi2 error level be shown on top of the plots
to the left?</p></td>
    </tr>
    <tr>
      <th>errmin_var</th>
      <td><p>The variable for which the FOCUS chi2 error value should
be shown.</p></td>
    </tr>
    <tr>
      <th>errmin_digits</th>
      <td><p>The number of significant digits for rounding the FOCUS
chi2 error percentage.</p></td>
    </tr>
    <tr>
      <th>cex</th>
      <td><p>Passed to the plot functions and <code><a href='https://rdrr.io/r/graphics/mtext.html'>mtext</a></code>.</p></td>
    </tr>
    <tr>
      <th>rel.height.middle</th>
      <td><p>The relative height of the middle plot, if more
than two rows of plots are shown.</p></td>
    </tr>
    <tr>
      <th>ymax</th>
      <td><p>Maximum y axis value for <code><a href='plot.mkinfit.html'>plot.mkinfit</a></code>.</p></td>
    </tr>
    <tr>
      <th>...</th>
      <td><p>Further arguments passed to <code><a href='plot.mkinfit.html'>plot.mkinfit</a></code> and
<code><a href='mkinresplot.html'>mkinresplot</a></code>.</p></td>
    </tr>
    </table>

    <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>

    <p>The function is called for its side effect.</p>
    <h2 class="hasAnchor" id="author"><a class="anchor" href="#author"></a>Author</h2>

    <p>Johannes Ranke</p>

    <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
    <pre class="examples"><div class='input'><span class='va'>ds</span> <span class='op'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/lapply.html'>lapply</a></span><span class='op'>(</span><span class='va'>experimental_data_for_UBA_2019</span><span class='op'>[</span><span class='fl'>6</span><span class='op'>:</span><span class='fl'>10</span><span class='op'>]</span>,
 <span class='kw'>function</span><span class='op'>(</span><span class='va'>x</span><span class='op'>)</span> <span class='fu'><a href='https://rdrr.io/r/base/subset.html'>subset</a></span><span class='op'>(</span><span class='va'>x</span><span class='op'>$</span><span class='va'>data</span><span class='op'>[</span><span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"name"</span>, <span class='st'>"time"</span>, <span class='st'>"value"</span><span class='op'>)</span><span class='op'>]</span>, <span class='va'>name</span> <span class='op'>==</span> <span class='st'>"parent"</span><span class='op'>)</span><span class='op'>)</span>
<span class='va'>f</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mmkin.html'>mmkin</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='va'>ds</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span>, cores <span class='op'>=</span> <span class='fl'>1</span><span class='op'>)</span>
</div><div class='output co'>#&gt; <span class='warning'>Warning: Shapiro-Wilk test for standardized residuals: p =  0.0195</span></div><div class='output co'>#&gt; <span class='warning'>Warning: Shapiro-Wilk test for standardized residuals: p =  0.011</span></div><div class='input'><span class='co'>#plot(f) # too many panels for pkgdown</span>
<span class='fu'><a href='https://rdrr.io/r/graphics/plot.default.html'>plot</a></span><span class='op'>(</span><span class='va'>f</span><span class='op'>[</span>, <span class='fl'>3</span><span class='op'>:</span><span class='fl'>4</span><span class='op'>]</span><span class='op'>)</span>
</div><div class='img'><img src='plot.nlme.mmkin-1.png' alt='' width='700' height='433' /></div><div class='input'><span class='kw'><a href='https://rdrr.io/r/base/library.html'>library</a></span><span class='op'>(</span><span class='va'><a href='https://svn.r-project.org/R-packages/trunk/nlme'>nlme</a></span><span class='op'>)</span>
<span class='va'>f_nlme</span> <span class='op'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/pkg/nlme/man/nlme.html'>nlme</a></span><span class='op'>(</span><span class='va'>f</span><span class='op'>)</span>

<span class='co'>#plot(f_nlme) # too many panels for pkgdown</span>
<span class='fu'><a href='https://rdrr.io/r/graphics/plot.default.html'>plot</a></span><span class='op'>(</span><span class='va'>f_nlme</span>, <span class='fl'>3</span><span class='op'>:</span><span class='fl'>4</span><span class='op'>)</span>
</div><div class='img'><img src='plot.nlme.mmkin-2.png' alt='' width='700' height='433' /></div></pre>
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