Plot a fitted nonlinear mixed model obtained via an mmkin row object

Plot a fitted nonlinear mixed model obtained via an mmkin row object

# S3 method for nlme.mmkin
plot(
  x,
  i = 1:ncol(x$mmkin_orig),
  main = "auto",
  legends = 1,
  resplot = c("time", "errmod"),
  standardized = FALSE,
  cex = 0.7,
  rel.height.middle = 0.9,
  ymax = "auto",
  ...
)

Arguments

x	An object of class nlme.mmkin
i	A numeric index to select datasets for which to plot the nlme fit, in case plots get too large
main	The main title placed on the outer margin of the plot.
legends	An index for the fits for which legends should be shown.
resplot	Should the residuals plotted against time, using mkinresplot, or as squared residuals against predicted values, with the error model, using mkinerrplot.
standardized	Should the residuals be standardized? This option is passed to mkinresplot, it only takes effect if `resplot = "time"`.
cex	Passed to the plot functions and mtext.
rel.height.middle	The relative height of the middle plot, if more than two rows of plots are shown.
ymax	Maximum y axis value for plot.mkinfit.
...	Further arguments passed to plot.mkinfit and mkinresplot.

Value

The function is called for its side effect.

Examples

ds <- lapply(experimental_data_for_UBA_2019[6:10],
 function(x) subset(x$data[c("name", "time", "value")], name == "parent"))
f <- mmkin("SFO", ds, quiet = TRUE, cores = 1)
#plot(f) # too many panels for pkgdown
library(nlme)
f_nlme <- nlme(f)

#plot(f_nlme) # too many panels for pkgdown
plot(f_nlme, 1:2)