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<title>Three experimental datasets from two water sediment systems and one soil — test_data_from_UBA_2014 • mkin</title>


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<meta property="og:title" content="Three experimental datasets from two water sediment systems and one soil — test_data_from_UBA_2014" />
<meta property="og:description" content="The datasets were used for the comparative validation of several kinetic evaluation
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    <h1>Three experimental datasets from two water sediment systems and one soil</h1>
    
    <div class="hidden name"><code>test_data_from_UBA_2014.Rd</code></div>
    </div>

    <div class="ref-description">
    <p>The datasets were used for the comparative validation of several kinetic evaluation
 software packages (Ranke, 2014).</p>
    </div>

    <pre class="usage"><span class='va'>test_data_from_UBA_2014</span></pre>


    <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>

    <p>A list containing three datasets as an R6 class defined by <code><a href='mkinds.html'>mkinds</a></code>.
  Each dataset has, among others, the following components</p><dl>
    <dt><code>title</code></dt><dd><p>The name of the dataset, e.g. <code>UBA_2014_WS_river</code></p></dd>
    <dt><code>data</code></dt><dd><p>A data frame with the data in the form expected by <code><a href='mkinfit.html'>mkinfit</a></code></p></dd>
  
</dl>

    <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>

    <p>Ranke (2014) Prüfung und Validierung von Modellierungssoftware als Alternative
  zu ModelMaker 4.0, Umweltbundesamt Projektnummer 27452</p>

    <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
    <pre class="examples"><div class='input'>  <span class='co'># \dontrun{</span>
  <span class='co'># This is a level P-II evaluation of the dataset according to the FOCUS kinetics</span>
  <span class='co'># guidance. Due to the strong correlation of the parameter estimates, the</span>
  <span class='co'># covariance matrix is not returned. Note that level P-II evaluations are</span>
  <span class='co'># generally considered deprecated due to the frequent occurrence of such</span>
  <span class='co'># large parameter correlations, among other reasons (e.g. the adequacy of the</span>
  <span class='co'># model).</span>
  <span class='va'>m_ws</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span><span class='op'>(</span>parent_w <span class='op'>=</span> <span class='fu'><a href='mkinmod.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='st'>"parent_s"</span><span class='op'>)</span>,
                  parent_s <span class='op'>=</span> <span class='fu'><a href='mkinmod.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='st'>"parent_w"</span><span class='op'>)</span><span class='op'>)</span>
</div><div class='output co'>#&gt; <span class='message'>Temporary DLL for differentials generated and loaded</span></div><div class='input'>  <span class='va'>f_river</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span><span class='op'>(</span><span class='va'>m_ws</span>, <span class='va'>test_data_from_UBA_2014</span><span class='op'>[[</span><span class='fl'>1</span><span class='op'>]</span><span class='op'>]</span><span class='op'>$</span><span class='va'>data</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'>  <span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span><span class='op'>(</span><span class='va'>f_river</span><span class='op'>)</span>
</div><div class='img'><img src='test_data_from_UBA_2014-1.png' alt='' width='700' height='433' /></div><div class='input'>
  <span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span><span class='op'>(</span><span class='va'>f_river</span><span class='op'>)</span><span class='op'>$</span><span class='va'>bpar</span>
</div><div class='output co'>#&gt; <span class='warning'>Warning: Could not calculate correlation; no covariance matrix</span></div><div class='output co'>#&gt;                           Estimate se_notrans t value Pr(&gt;t) Lower Upper
#&gt; parent_w_0             95.91998118         NA      NA     NA    NA    NA
#&gt; k_parent_w              0.41145375         NA      NA     NA    NA    NA
#&gt; k_parent_s              0.04663944         NA      NA     NA    NA    NA
#&gt; f_parent_w_to_parent_s  0.12467894         NA      NA     NA    NA    NA
#&gt; f_parent_s_to_parent_w  0.50000000         NA      NA     NA    NA    NA
#&gt; sigma                   3.13612618         NA      NA     NA    NA    NA</div><div class='input'>  <span class='fu'><a href='mkinerrmin.html'>mkinerrmin</a></span><span class='op'>(</span><span class='va'>f_river</span><span class='op'>)</span>
</div><div class='output co'>#&gt;            err.min n.optim df
#&gt; All data 0.1090929       5  6
#&gt; parent_w 0.0817436       3  3
#&gt; parent_s 0.1619965       2  3</div><div class='input'>
  <span class='co'># This is the evaluation used for the validation of software packages</span>
  <span class='co'># in the expertise from 2014</span>
  <span class='va'>m_soil</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span><span class='op'>(</span>parent <span class='op'>=</span> <span class='fu'><a href='mkinmod.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"M1"</span>, <span class='st'>"M2"</span><span class='op'>)</span><span class='op'>)</span>,
                    M1 <span class='op'>=</span> <span class='fu'><a href='mkinmod.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='st'>"M3"</span><span class='op'>)</span>,
                    M2 <span class='op'>=</span> <span class='fu'><a href='mkinmod.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='st'>"M3"</span><span class='op'>)</span>,
                    M3 <span class='op'>=</span> <span class='fu'><a href='mkinmod.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span><span class='op'>)</span>,
                    use_of_ff <span class='op'>=</span> <span class='st'>"max"</span><span class='op'>)</span>
</div><div class='output co'>#&gt; <span class='message'>Temporary DLL for differentials generated and loaded</span></div><div class='input'>
  <span class='va'>f_soil</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span><span class='op'>(</span><span class='va'>m_soil</span>, <span class='va'>test_data_from_UBA_2014</span><span class='op'>[[</span><span class='fl'>3</span><span class='op'>]</span><span class='op'>]</span><span class='op'>$</span><span class='va'>data</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'>  <span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span><span class='op'>(</span><span class='va'>f_soil</span>, lpos <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"topright"</span>, <span class='st'>"topright"</span>, <span class='st'>"topright"</span>, <span class='st'>"bottomright"</span><span class='op'>)</span><span class='op'>)</span>
</div><div class='img'><img src='test_data_from_UBA_2014-2.png' alt='' width='700' height='433' /></div><div class='input'>  <span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span><span class='op'>(</span><span class='va'>f_soil</span><span class='op'>)</span><span class='op'>$</span><span class='va'>bpar</span>
</div><div class='output co'>#&gt;                   Estimate  se_notrans    t value       Pr(&gt;t)        Lower
#&gt; parent_0       76.55425650 0.859186399 89.1008710 1.113861e-26 74.755959418
#&gt; k_parent        0.12081956 0.004601918 26.2541722 1.077359e-16  0.111561575
#&gt; k_M1            0.84258615 0.806160102  1.0451846 1.545268e-01  0.113779609
#&gt; k_M2            0.04210880 0.017083034  2.4649483 1.170188e-02  0.018013857
#&gt; k_M3            0.01122918 0.007245856  1.5497385 6.885052e-02  0.002909431
#&gt; f_parent_to_M1  0.32240200 0.240783943  1.3389680 9.819076e-02           NA
#&gt; f_parent_to_M2  0.16099855 0.033691952  4.7785464 6.531136e-05           NA
#&gt; f_M1_to_M3      0.27921507 0.269423780  1.0363416 1.565267e-01  0.022978205
#&gt; f_M2_to_M3      0.55641252 0.595119966  0.9349586 1.807707e-01  0.008002509
#&gt; sigma           1.14005399 0.149696423  7.6157731 1.727024e-07  0.826735778
#&gt;                      Upper
#&gt; parent_0       78.35255358
#&gt; k_parent        0.13084582
#&gt; k_M1            6.23970702
#&gt; k_M2            0.09843260
#&gt; k_M3            0.04333992
#&gt; f_parent_to_M1          NA
#&gt; f_parent_to_M2          NA
#&gt; f_M1_to_M3      0.86450775
#&gt; f_M2_to_M3      0.99489895
#&gt; sigma           1.45337221</div><div class='input'>  <span class='fu'><a href='mkinerrmin.html'>mkinerrmin</a></span><span class='op'>(</span><span class='va'>f_soil</span><span class='op'>)</span>
</div><div class='output co'>#&gt;             err.min n.optim df
#&gt; All data 0.09649963       9 20
#&gt; parent   0.04721283       2  6
#&gt; M1       0.26551208       2  5
#&gt; M2       0.20327575       2  5
#&gt; M3       0.05196550       3  4</div><div class='input'>  <span class='co'># }</span>
</div></pre>
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