# Simple gWidgetsWWW2 GUI for mkin # Set the GUI title and create the parent frame {{{1 require("mkin") GUI_title <- "Simple Browser based GUI for kinetic evaluations using mkin" w <- gwindow(GUI_title) sb <- gstatusbar("Powered by gWidgetsWWW2 and Rook", cont = w) g <- gframe(GUI_title, cont = w, use.scrollwindow = TRUE, horizontal = FALSE) # Set default values for project data objects {{{1 project_file <- "mkin_project_1.RData" # Observed variables {{{2 n.observed <- 2 observed.names = c("parent", paste("M", 1:(n.observed - 1), sep="")) observed.df = data.frame(Index = 1:n.observed, Name = observed.names, Chemical = "NA", stringsAsFactors = FALSE) # Studies {{{2 studies.df <- data.frame(Index = as.integer(1), Author = "FOCUS kinetics workgroup", Year = "2006", Title = "FOCUS Kinetics", stringsAsFactors = FALSE) # Datasets {{{2 ds <- list() # FOCUS 2006 datasets {{{3 for (i in 1:6) { ds.letter = LETTERS[i] ds.name = paste0("FOCUS_2006_", ds.letter) ds[[i]] <- list( study_nr = 1, dataset_nr = i, title = paste("FOCUS example dataset", ds.letter), sampling_times = unique(get(ds.name)$time), time_unit = "NA", observed = length(levels(get(ds.name)$name)), unit = "% AR", replicates = 1, data = get(ds.name) ) ds[[i]]$data$override = "NA" ds[[i]]$data$weight = 1 } # Dataframe with datasets for selecting them with the gtable widget {{{2 ds.df <- data.frame() update_ds.df <- function() { ds.n <- length(ds) ds.df <<- data.frame(Index = 1:ds.n, Study = character(ds.n), Title = character(ds.n), icon = asIcon(rep("editor", ds.n)), stringsAsFactors = FALSE) for (i in 1:ds.n) { ds.df[i, "Study"] <<- ds[[i]]$study_nr ds.df[i, "Title"] <<- ds[[i]]$title } } update_ds.df() # Set the initial dataset number ds.cur = 1 # Project data management {{{1 upload_file_handler <- function(h, ...) # {{{2 { tmpfile <- normalizePath(svalue(h$obj), winslash = "/") try(load(tmpfile)) project_file <<- pr.gf$filename svalue(wf.ge) <- project_file observed.gdf[,] <- observed.df studies.gdf[,] <- studies.df # ds <- ds } save_to_file_handler <- function(h, ...) # {{{2 { observed.df <- data.frame(observed.gdf[,], stringsAsFactors = FALSE) studies.df <- data.frame(studies.gdf[,], stringsAsFactors = FALSE) save(observed.df, studies.df, ds, file = project_file) galert(paste("Saved project contents to", project_file), parent = w) } # Add widgets for project file management to an expandable group {{{1 prg <- gexpandgroup("Project file management", cont = g) pr.vg <- ggroup(cont = prg, horizontal = FALSE) pr.hg <- ggroup(cont = pr.vg, horizontal = TRUE) pr.gf <- gfile(text = "Select project file", cont = pr.hg, handler = upload_file_handler) pr.vg2 <- ggroup(cont = pr.hg, horizontal = FALSE) pr.hg2 <- ggroup(cont = pr.vg2, horizontal = TRUE) glabel("Current project file name is", cont = pr.hg2) change_project_file_handler = function(h, ...) { project_file <<- as.character(svalue(h$obj)) } wf.ge <- gedit(project_file, cont = pr.hg2, handler = change_project_file_handler) gbutton("Save current project contents to this file", cont = pr.vg2, handler = save_to_file_handler) # Expandable group for observed variables {{{1 ovg <- gexpandgroup("Observed variables", cont = g) observed.gdf <- gdf(observed.df, name = "Names of observed variables", width = 500, height = 250, cont = ovg) observed.gdf$set_column_width(1, 40) # Expandable group for studies {{{1 stg <- gexpandgroup("Studies", cont = g) studies.gdf <- gdf(studies.df, name = "Studies in the project", width = 500, height = 200, cont = stg) studies.gdf$set_column_width(1, 40) studies.gdf$set_column_width(2, 200) # Expandable group for datasets {{{1 dsg <- gexpandgroup("Datasets", cont = g, horizontal = FALSE) ds.handler <- function(h, ...) { ds.cur <<- svalue(h$obj, index = FALSE) delete(ds.editor, ds.e.head) delete(ds.editor, ds.e.data) show_ds_editor() } ds.gtable <- gtable(ds.df, handler = ds.handler, cont = dsg) size(ds.gtable) <- list(columnWidths = c(40, 40, 200, 40)) # Dataset editor {{{2 update_dataset_handler <- function(h, ...) { galert("test", parent = w) } new_dataset_handler <- function(h, ...) { galert("test", parent = w) } ds.editor <- gframe("Dataset 1", horizontal = FALSE, cont = dsg) ds.e.head <- ggroup(cont = ds.editor, horizontal = FALSE) ds.e.data <- ggroup(cont = ds.editor, horizontal = FALSE) show_ds_editor <- function() { svalue(ds.editor) <- paste("Dataset", ds.cur) ds.e.head <<- ggroup(cont = ds.editor, horizontal = FALSE) ds.e.1 <- ggroup(cont = ds.e.head, horizontal = TRUE) glabel("Title: ", cont = ds.e.1) ds.title.ge <- gedit(ds[[ds.cur]]$title, cont = ds.e.1, handler = function(h, ...) { ds[[ds.cur]]$title <<- svalue(h$obj) update_ds.df() ds.gtable[,] <- ds.df }) glabel(" from ", cont = ds.e.1) ds.study.gc <- gcombobox(paste("Study", studies.gdf[,1]), cont = ds.e.1) ds.e.save <- gbutton("Save changes", cont = ds.e.1, handler = update_dataset_handler) ds.e.new <- gbutton("New dataset", cont = ds.e.1, handler = new_dataset_handler) ds.e.2 <- glayout(cont = ds.e.head) ds.e.2[1, 1] <- glabel("Sampling times: ", cont = ds.e.2) ds.e.2[1, 2] <- gedit(paste(ds[[ds.cur]]$sampling_times, collapse = ", "), cont = ds.e.2) ds.e.2[1, 3] <- glabel("Unit: ", cont = ds.e.2) ds.e.2[1, 4] <- gedit(ds[[ds.cur]]$time_unit, width = 8, cont = ds.e.2) ds.e.2[2, 1] <- glabel("Observed variables: ", cont = ds.e.2) ds.e.2[2, 2] <- gedit(ds[[ds.cur]]$observed, cont = ds.e.2) ds.e.2[2, 3] <- glabel("Unit: ", cont = ds.e.2) ds.e.2[2, 4] <- gedit(ds[[ds.cur]]$unit, width = 8, cont = ds.e.2) ds.e.2[3, 1] <- glabel("Replicates: ", cont = ds.e.2) ds.e.2[3, 2] <- gedit(ds[[ds.cur]]$replicates, width = 2, cont = ds.e.2) ds.e.2[3, 3:4] <- gbutton("Generate empty grid", cont = ds.e.2, handler = update_dataset_handler) visible(ds.e.2) <- TRUE ds.e.data <<- ggroup(cont = ds.editor, horizontal = FALSE) ds.e.gdf <- gdf(ds[[ds.cur]]$data, name = "Kinetic data", width = 700, height = 700, cont = ds.e.data) ds.e.gdf$set_column_width(2, 50) ds.e.gdf$set_column_width(3, 50) ds.e.gdf$set_column_width(4, 50) } show_ds_editor() # 1}}} # vim: set foldmethod=marker ts=2 sw=2 expandtab: