test.mkinmod.SFO <- function() { SFO.diffs <- c( parent = "d_parent = - k_parent_sink * parent" ) SFO.parms <- c("k_parent_sink") SFO.map <- list(parent = c(SFO = "parent")) SFO <- list(diffs = SFO.diffs, parms = SFO.parms, map = SFO.map) class(SFO) <- "mkinmod" SFO.1 <- mkinmod( parent = list(type = "SFO", to = NULL, sink = TRUE) ) checkIdentical(SFO, SFO.1) SFO.2 <- mkinmod( parent = list(type = "SFO", to = NULL) ) checkIdentical(SFO, SFO.2) SFO.3 <- mkinmod( parent = list(type = "SFO", sink = TRUE) ) checkIdentical(SFO, SFO.3) SFO.4 <- mkinmod( parent = list(type = "SFO") ) checkIdentical(SFO, SFO.3) } test.mkinmod.SFORB <- function() { SFORB.diffs <- c( parent_free = paste( "d_parent_free = - k_parent_free_sink * parent_free", "- k_parent_free_bound * parent_free", "+ k_parent_bound_free * parent_bound"), parent_bound = paste( "d_parent_bound =", "+ k_parent_free_bound * parent_free", "- k_parent_bound_free * parent_bound") ) SFORB.parms <- c("k_parent_free_sink", "k_parent_free_bound", "k_parent_bound_free") SFORB.map <- list(parent = c(SFORB = "parent_free", SFORB = "parent_bound")) SFORB <- list(diffs = SFORB.diffs, parms = SFORB.parms, map = SFORB.map) class(SFORB) <- "mkinmod" SFORB.mkinmod <- mkinmod( parent = list(type = "SFORB", to = NULL, sink=TRUE) ) checkIdentical(SFORB, SFORB.mkinmod) } test.mkinmod.SFO_SFO <- function() { SFO_SFO.diffs <- c( parent = "d_parent = - k_parent_sink * parent - k_parent_m1 * parent", m1 = "d_m1 = - k_m1_sink * m1 + k_parent_m1 * parent" ) SFO_SFO.parms <- c("k_parent_sink", "k_m1_sink", "k_parent_m1") SFO_SFO.map <- list(parent = c(SFO = "parent"), m1 = c(SFO = "m1")) SFO_SFO <- list(diffs = SFO_SFO.diffs, parms = SFO_SFO.parms, map = SFO_SFO.map) class(SFO_SFO) <- "mkinmod" SFO_SFO.mkinmod <- mkinmod( parent = list(type = "SFO", to = "m1", sink=TRUE), m1 = list(type = "SFO", sink=TRUE) ) checkIdentical(SFO_SFO, SFO_SFO.mkinmod) } test.mkinmod.SFO_SFO2 <- function() { SFO_SFO2.diffs <- c( parent = "d_parent = - k_parent_sink * parent - k_parent_m1 * parent - k_parent_m2 * parent", m1 = "d_m1 = - k_m1_sink * m1 + k_parent_m1 * parent", m2 = "d_m2 = - k_m2_sink * m2 + k_parent_m2 * parent" ) SFO_SFO2.parms <- c("k_parent_sink", "k_m1_sink", "k_m2_sink", "k_parent_m1", "k_parent_m2") SFO_SFO2.map <- list(parent = c(SFO = "parent"), m1 = c(SFO = "m1"), m2 = c(SFO = "m2")) SFO_SFO2 <- list(diffs = SFO_SFO2.diffs, parms = SFO_SFO2.parms, map = SFO_SFO2.map) class(SFO_SFO2) <- "mkinmod" SFO_SFO2.mkinmod <- mkinmod( parent = list(type = "SFO", to = c("m1", "m2"), sink=TRUE), m1 = list(type = "SFO", sink=TRUE), m2 = list(type = "SFO", sink=TRUE) ) checkIdentical(SFO_SFO2, SFO_SFO2.mkinmod) } test.mkinmod.FOMC_SFO2 <- function() { FOMC_SFO2.diffs <- c( parent = "d_parent = - (alpha/beta) * ((time/beta) + 1)^-1 * parent", m1 = "d_m1 = - k_m1_sink * m1 + f_to_m1 * (alpha/beta) * ((time/beta) + 1)^-1 * parent", m2 = "d_m2 = - k_m2_sink * m2 + (1 - f_to_m1) * f_to_m2 * (alpha/beta) * ((time/beta) + 1)^-1 * parent" ) FOMC_SFO2.parms <- c("alpha", "beta", "k_m1_sink", "k_m2_sink", "f_to_m1", "f_to_m2") FOMC_SFO2.map <- list(parent = c(FOMC = "parent"), m1 = c(SFO = "m1"), m2 = c(SFO = "m2")) FOMC_SFO2 <- list(diffs = FOMC_SFO2.diffs, parms = FOMC_SFO2.parms, map = FOMC_SFO2.map) class(FOMC_SFO2) <- "mkinmod" FOMC_SFO2.mkinmod <- mkinmod( parent = list(type = "FOMC", to = c("m1", "m2"), sink=TRUE), m1 = list(type = "SFO"), m2 = list(type = "SFO") ) checkIdentical(FOMC_SFO2, FOMC_SFO2.mkinmod) }