<!DOCTYPE html> <html lang="en"> <head> <meta charset="utf-8"> <title>mkinresplot. mkin 0.9.42</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke "> <link href="css/bootstrap.css" rel="stylesheet"> <link href="css/bootstrap-responsive.css" rel="stylesheet"> <link href="css/highlight.css" rel="stylesheet"> <link href="css/staticdocs.css" rel="stylesheet"> <!--[if lt IE 9]> <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> <![endif]--> <script type="text/x-mathjax-config"> MathJax.Hub.Config({ tex2jax: { inlineMath: [ ['$','$'], ["\\(","\\)"] ], processEscapes: true } }); </script> <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"> </script> </head> <body> <div class="navbar"> <div class="navbar-inner"> <div class="container"> <a class="brand" href="#">mkin 0.9.42</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> </ul> </div> </div> </div> </div> <div class="container"> <header> </header> <h1> Function to plot residuals stored in an mkin object </h1> <div class="row"> <div class="span8"> <h2>Usage</h2> <pre><div>mkinresplot(object, obs_vars = names(object$mkinmod$map), xlim = c(0, 1.1 * max(object$data$time)), xlab = "Time", ylab = "Residual", maxabs = "auto", legend = TRUE, lpos = "topright", ...)</div></pre> <h2>Arguments</h2> <dl> <dt>object</dt> <dd> A fit represented in an <code><a href='mkinfit.html'>mkinfit</a></code> object. </dd> <dt>obs_vars</dt> <dd> A character vector of names of the observed variables for which residuals should be plotted. Defaults to all observed variables in the model </dd> <dt>xlim</dt> <dd> plot range in x direction. </dd> <dt>xlab</dt> <dd> Label for the x axis. Defaults to "Time [days]". </dd> <dt>ylab</dt> <dd> Label for the y axis. Defaults to "Residual [% of applied radioactivity]". </dd> <dt>maxabs</dt> <dd> Maximum absolute value of the residuals. This is used for the scaling of the y axis and defaults to "auto". </dd> <dt>legend</dt> <dd> Should a legend be plotted? Defaults to "TRUE". </dd> <dt>lpos</dt> <dd> Where should the legend be placed? Default is "topright". Will be passed on to <code><a href='http://www.inside-r.org/r-doc/graphics/legend'>legend</a></code>. </dd> <dt>...</dt> <dd> further arguments passed to <code><a href='http://www.inside-r.org/r-doc/graphics/plot'>plot</a></code>. </dd> </dl> <div class="Description"> <h2>Description</h2> <p>This function plots the residuals for the specified subset of the observed variables from an mkinfit object. A combined plot of the fitted model and the residuals can be obtained using <code><a href='plot.mkinfit.html'>plot.mkinfit</a></code> using the argument <code>show_residuals = TRUE</code>.</p> </div> <div class="Value"> <h2>Value</h2> <p><dl> Nothing is returned by this function, as it is called for its side effect, namely to produce a plot. </dl></p> </div> <h2 id="examples">Examples</h2> <pre class="examples"><div class='input'>model <- mkinmod(parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO")) </div> <strong class='message'>Successfully compiled differential equation model from auto-generated C code.</strong> <div class='input'>fit <- mkinfit(model, FOCUS_2006_D, quiet = TRUE) mkinresplot(fit, "m1") </div> <p><img src='mkinresplot-4.png' alt='' width='540' height='400' /></p></pre> </div> <div class="span4"> <!-- <ul> <li>mkinresplot</li> </ul> <ul> <li> hplot </li> </ul> --> <h2>See also</h2> <code><a href='mkinplot.html'>mkinplot</a></code>, for a way to plot the data and the fitted lines of the mkinfit object. <h2>Author</h2> Johannes Ranke </div> </div> <footer> <p class="pull-right"><a href="#">Back to top</a></p> <p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p> </footer> </div> </body> </html>