Fit one or more kinetic models with one or more state variables to one or more datasets

Usage

mmkin(models, datasets, cores = round(detectCores()/2), cluster = NULL, ...)

Arguments

models

Either a character vector of shorthand names ("SFO", "FOMC", "DFOP", "HS", "SFORB"), or an optionally named list of mkinmod objects.

datasets

An optionally named list of datasets suitable as observed data for mkinfit.

cores

The number of cores to be used for multicore processing. This is only used when the cluster argument is NULL.

cluster

A cluster as returned by makeCluster to be used for parallel execution.

...

Further arguments that will be passed to mkinfit.

Examples

## Not run: 
# m_synth_SFO_lin <- mkinmod(parent = mkinsub("SFO", "M1"),
#                            M1 = mkinsub("SFO", "M2"),
#                            M2 = mkinsub("SFO"), use_of_ff = "max")
# 
# m_synth_FOMC_lin <- mkinmod(parent = mkinsub("FOMC", "M1"),
#                             M1 = mkinsub("SFO", "M2"),
#                             M2 = mkinsub("SFO"), use_of_ff = "max")
# 
# models <- list(SFO_lin = m_synth_SFO_lin, FOMC_lin = m_synth_FOMC_lin)
# datasets <- lapply(synthetic_data_for_UBA_2014[1:3], function(x) x$data)
# names(datasets) <- paste("Dataset", 1:3)
# 
# time_default <- system.time(fits.0 <- mmkin(models, datasets))
# time_1 <- system.time(fits.1 <- mmkin(models, datasets, cores = 1))
# 
# time_default
# time_1
# 
# endpoints(fits[["SFO_lin", 2]])
# 
# # Plot.mkinfit handles rows or columns of mmkin result objects
# plot(fits.0[1, ])
# plot(fits.0[1, ], obs_var = c("M1", "M2"))
# plot(fits.0[, 1])
# # Use double brackets to extract a single mkinfit object, which will be plotted
# # by plot.mkinfit
# plot(fits.0[[1, 1]], sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE)
# # Plotting with mmkin (single brackets, extracting an mmkin object) does not
# # allow to plot the observed variables separately
# plot(fits.0[1, 1])
# ## End(Not run)

See also

Author