<!DOCTYPE html> <html lang="en"> <head> <meta charset="utf-8"> <title>mmkin. mkin 0.9.42</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke "> <link href="css/bootstrap.css" rel="stylesheet"> <link href="css/bootstrap-responsive.css" rel="stylesheet"> <link href="css/highlight.css" rel="stylesheet"> <link href="css/staticdocs.css" rel="stylesheet"> <!--[if lt IE 9]> <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> <![endif]--> <script type="text/x-mathjax-config"> MathJax.Hub.Config({ tex2jax: { inlineMath: [ ['$','$'], ["\\(","\\)"] ], processEscapes: true } }); </script> <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"> </script> </head> <body> <div class="navbar"> <div class="navbar-inner"> <div class="container"> <a class="brand" href="#">mkin 0.9.42</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> </ul> </div> </div> </div> </div> <div class="container"> <header> </header> <h1> Fit one or more kinetic models with one or more state variables to one or more datasets </h1> <div class="row"> <div class="span8"> <h2>Usage</h2> <pre><div>mmkin(models, datasets, cores = round(detectCores()/2), cluster = NULL, ...)</div></pre> <h2>Arguments</h2> <dl> <dt>models</dt> <dd> Either a character vector of shorthand names ("SFO", "FOMC", "DFOP", "HS", "SFORB"), or an optionally named list of <code><a href='mkinmod.html'>mkinmod</a></code> objects. </dd> <dt>datasets</dt> <dd> An optionally named list of datasets suitable as observed data for <code><a href='mkinfit.html'>mkinfit</a></code>. </dd> <dt>cores</dt> <dd> The number of cores to be used for multicore processing. This is only used when the <code>cluster</code> argument is <code>NULL</code>. </dd> <dt>cluster</dt> <dd> A cluster as returned by <code><a href='http://www.inside-r.org/r-doc/parallel/makeCluster'>makeCluster</a></code> to be used for parallel execution. </dd> <dt>...</dt> <dd> Further arguments that will be passed to <code><a href='mkinfit.html'>mkinfit</a></code>. </dd> </dl> <div class="Description"> <h2>Description</h2> <p>This function calls <code><a href='mkinfit.html'>mkinfit</a></code> on all combinations of models and datasets specified in its first two arguments.</p> </div> <div class="Value"> <h2>Value</h2> <p><dl> A matrix of <code><a href='mkinfit.html'>mkinfit</a></code> objects that can be indexed using the model and dataset names as row and column indices. </dl></p> </div> <h2 id="examples">Examples</h2> <pre class="examples"><div class='input'>## Not run: # m_synth_SFO_lin <- mkinmod(parent = list(type = "SFO", to = "M1"), # M1 = list(type = "SFO", to = "M2"), # M2 = list(type = "SFO"), use_of_ff = "max") # # m_synth_FOMC_lin <- mkinmod(parent = list(type = "FOMC", to = "M1"), # M1 = list(type = "SFO", to = "M2"), # M2 = list(type = "SFO"), use_of_ff = "max") # # models <- list(SFO_lin = m_synth_SFO_lin, FOMC_lin = m_synth_FOMC_lin) # datasets <- lapply(synthetic_data_for_UBA_2014[1:3], function(x) x$data) # # time_default <- system.time(fits <- mmkin(models, datasets)) # time_1 <- system.time(fits.1 <- mmkin(models, datasets, cores = 1)) # # time_default # time_1 # # endpoints(fits[["SFO_lin", 2]]) # ## End(Not run) </div></pre> </div> <div class="span4"> <!-- <ul> <li>mmkin</li> </ul> <ul> <li> optimize </li> </ul> --> <h2>See also</h2> <code><a href='Extract.mmkin.html'>[.mmkin</a></code> for subsetting, <code><a href='plot.mmkin.html'>plot.mmkin</a></code> for plotting. <h2>Author</h2> Johannes Ranke </div> </div> <footer> <p class="pull-right"><a href="#">Back to top</a></p> <p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p> </footer> </div> </body> </html>