<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>schaefer07_complex_case. mkin 0.9.42</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta name="author" content="">
<link href="css/bootstrap.css" rel="stylesheet">
<link href="css/bootstrap-responsive.css" rel="stylesheet">
<link href="css/highlight.css" rel="stylesheet">
<link href="css/staticdocs.css" rel="stylesheet">
<!--[if lt IE 9]>
<script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script>
<![endif]-->
<script type="text/x-mathjax-config">
MathJax.Hub.Config({
tex2jax: {
inlineMath: [ ['$','$'], ["\\(","\\)"] ],
processEscapes: true
}
});
</script>
<script type="text/javascript"
src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
</script>
</head>
<body>
<div class="navbar">
<div class="navbar-inner">
<div class="container">
<a class="brand" href="#">mkin 0.9.42</a>
<div class="nav">
<ul class="nav">
<li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
</ul>
</div>
</div>
</div>
</div>
<div class="container">
<header>
</header>
<h1>
Metabolism data set used for checking the software quality of KinGUI
</h1>
<div class="row">
<div class="span8">
<h2>Usage</h2>
<pre><div>data(schaefer07_complex_case)</div></pre>
<div class="Description">
<h2>Description</h2>
<p>This dataset was used for a comparison of KinGUI and ModelMaker to check the
software quality of KinGUI in the original publication (Schäfer et al., 2007).
The results from the fitting are also included.</p>
</div>
<div class="Format">
<h2>Format</h2>
<p>The data set is a data frame with 8 observations on the following 6 variables.
<dl>
<dt><code>time</code></dt><dd>a numeric vector</dd></p>
<p><dt><code>parent</code></dt><dd>a numeric vector</dd></p>
<p><dt><code>A1</code></dt><dd>a numeric vector</dd></p>
<p><dt><code>B1</code></dt><dd>a numeric vector</dd></p>
<p><dt><code>C1</code></dt><dd>a numeric vector</dd></p>
<p><dt><code>A2</code></dt><dd>a numeric vector</dd></p>
<p></dl></p>
<p>The results are a data frame with 14 results for different parameter values</p>
</div>
<div class="References">
<h2>References</h2>
<p>Schäfer D, Mikolasch B, Rainbird P and Harvey B (2007). KinGUI: a new kinetic
software tool for evaluations according to FOCUS degradation kinetics. In: Del
Re AAM, Capri E, Fragoulis G and Trevisan M (Eds.). Proceedings of the XIII
Symposium Pesticide Chemistry, Piacenza, 2007, p. 916-923.</p>
</div>
<h2 id="examples">Examples</h2>
<pre class="examples"><div class='input'>data <- mkin_wide_to_long(schaefer07_complex_case, time = "time")
model <- mkinmod(
parent = list(type = "SFO", to = c("A1", "B1", "C1"), sink = FALSE),
A1 = list(type = "SFO", to = "A2"),
B1 = list(type = "SFO"),
C1 = list(type = "SFO"),
A2 = list(type = "SFO"), use_of_ff = "max")
</div>
<strong class='message'>Successfully compiled differential equation model from auto-generated C code.</strong>
<div class='input'>## Not run: mkinfit(model, data, plot=TRUE)
</div></pre>
</div>
<div class="span4">
<!-- <ul>
<li>schaefer07_complex_case</li><li>schaefer07_complex_results</li>
</ul>
<ul>
<li>datasets</li>
</ul> -->
</div>
</div>
<footer>
<p class="pull-right"><a href="#">Back to top</a></p>
<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p>
</footer>
</div>
</body>
</html>