ℹ Loading mkin
Loading required package: parallel
ℹ Testing mkin
✔ |  OK F W S | Context
✔ |   5       | AIC calculation
✔ |   5       | Analytical solutions for coupled models [3.4 s]
✔ |   5       | Calculation of Akaike weights
✔ |   2       | Export dataset for reading into CAKE
✔ |  12       | Confidence intervals and p-values [1.1 s]
✔ |  14       | Error model fitting [4.8 s]
✔ |   5       | Time step normalisation
✔ |   4       | Calculation of FOCUS chi2 error levels [0.6 s]
✔ |  14       | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8 s]
✔ |   4       | Test fitting the decline of metabolites from their maximum [0.3 s]
✔ |   1       | Fitting the logistic model [0.2 s]
✔ |  35     1 | Nonlinear mixed-effects models [27.8 s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:161:3): saem results are reproducible for biphasic fits
Reason: Fitting with saemix takes around 10 minutes when using deSolve
────────────────────────────────────────────────────────────────────────────────
✔ |   2       | Test dataset classes mkinds and mkindsg
✔ |  10       | Special cases of mkinfit calls [0.4 s]
✔ |   1       | mkinfit features [0.3 s]
✔ |   8       | mkinmod model generation and printing [0.2 s]
✔ |   3       | Model predictions with mkinpredict [0.3 s]
✔ |  16       | Evaluations according to 2015 NAFTA guidance [1.5 s]
✔ |   9       | Nonlinear mixed-effects models with nlme [8.2 s]
✖ |  15 1 2   | Plotting [1.3 s]
────────────────────────────────────────────────────────────────────────────────
Warning (test_plot.R:38:5): Plotting mkinfit, mmkin and mixed model objects is reproducible
Adding new file snapshot: '_snaps/plot/mixed-model-fit-for-saem-object-with-saemix-transformations.svg'

Failure (test_plot.R:44:3): Plotting mkinfit, mmkin and mixed model objects is reproducible
Snapshot of `testcase` to 'plot/mixed-model-fit-for-nlme-object.svg' has changed
Run `testthat::snapshot_review('plot')` to review changes
Backtrace:
 1. vdiffr::expect_doppelganger(...) test_plot.R:44:2
 3. testthat::expect_snapshot_file(...)

Warning (test_plot.R:53:5): Plotting mkinfit, mmkin and mixed model objects is reproducible
Adding new file snapshot: '_snaps/plot/mixed-model-fit-for-saem-object-with-mkin-transformations.svg'
────────────────────────────────────────────────────────────────────────────────
✔ |   4       | Residuals extracted from mkinfit models
✔ |   2       | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s]
✔ |   7       | Fitting the SFORB model [3.9 s]
✔ |   1       | Summaries of old mkinfit objects
✔ |   4       | Summary [0.1 s]
✔ |   4       | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3 s]
✔ |   9       | Hypothesis tests [8.6 s]
✔ |   4       | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s]

══ Results ═════════════════════════════════════════════════════════════════════
Duration: 70.3 s

── Skipped tests  ──────────────────────────────────────────────────────────────
• Fitting with saemix takes around 10 minutes when using deSolve (1)

[ FAIL 1 | WARN 2 | SKIP 1 | PASS 205 ]