ℹ Loading mkin
Loading required package: parallel
ℹ Testing mkin
✔ |  OK F W S | Context
✔ |   5       | AIC calculation
✔ |   5       | Analytical solutions for coupled models [3.2 s]
✔ |   5       | Calculation of Akaike weights
✔ |   2       | Export dataset for reading into CAKE
✔ |  12       | Confidence intervals and p-values [1.3 s]
✔ |  14       | Error model fitting [4.3 s]
✔ |   5       | Time step normalisation
✔ |   4       | Calculation of FOCUS chi2 error levels [0.5 s]
✔ |  14       | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.7 s]
✔ |   4       | Test fitting the decline of metabolites from their maximum [0.3 s]
✔ |   1       | Fitting the logistic model [0.2 s]
✔ |   5       | Nonlinear mixed-effects models [0.1 s]
✔ |   2       | Test dataset classes mkinds and mkindsg
✔ |  10       | Special cases of mkinfit calls [0.3 s]
✔ |   1       | mkinfit features [0.3 s]
✔ |   8       | mkinmod model generation and printing [0.2 s]
✔ |   3       | Model predictions with mkinpredict [0.3 s]
✔ |  16       | Evaluations according to 2015 NAFTA guidance [1.7 s]
✖ |   7 1     | Nonlinear mixed-effects models [1.9 s]
────────────────────────────────────────────────────────────────────────────────
Error (test_nlme.R:116:3): nlme_function works correctly in other cases
Error: unused argument ("sysname")
Backtrace:
 1. mkin::mmkin("SFO", ds_me_sfo_5, quiet = TRUE) test_nlme.R:116:2
 2. parallel::mclapply(...) /home/jranke/git/mkin/R/mmkin.R:118:4
────────────────────────────────────────────────────────────────────────────────
✖ |  10 4     | Plotting [1.7 s]
────────────────────────────────────────────────────────────────────────────────
Failure (test_plot.R:20:3): Plotting mkinfit, mmkin and mixed model objects is reproducible
Figures don't match: mkinfit-plot-for-focus-c-with-residuals-like-in-gmkin.svg


Failure (test_plot.R:21:3): Plotting mkinfit, mmkin and mixed model objects is reproducible
Figures don't match: plot-res-for-focus-c.svg


Failure (test_plot.R:22:3): Plotting mkinfit, mmkin and mixed model objects is reproducible
Figures don't match: mkinfit-plot-for-focus-c-with-sep-true.svg


Failure (test_plot.R:30:3): Plotting mkinfit, mmkin and mixed model objects is reproducible
Figures don't match: plot-res-for-focus-d.svg

────────────────────────────────────────────────────────────────────────────────
✔ |   4       | Residuals extracted from mkinfit models
✔ |   2       | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s]
✔ |   7       | Fitting the SFORB model [3.6 s]
✔ |   1       | Summaries of old mkinfit objects
✔ |   4       | Summary [0.1 s]
✔ |   4       | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s]
✔ |   9       | Hypothesis tests [8.1 s]
✔ |   4       | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s]

══ Results ═════════════════════════════════════════════════════════════════════
Duration: 35.2 s

[ FAIL 5 | WARN 0 | SKIP 0 | PASS 168 ]