ℹ Loading mkin Loading required package: parallel ℹ Testing mkin ✔ | F W S OK | Context ✔ | 5 | AIC calculation ✔ | 5 | Analytical solutions for coupled models [14.4s] ✔ | 5 | Calculation of Akaike weights ✔ | 2 | Export dataset for reading into CAKE ✔ | 12 | Confidence intervals and p-values [1.0s] ⠋ | 1 | Dimethenamid data from 2018 ✔ | 1 27 | Dimethenamid data from 2018 [124.8s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_dmta.R:164:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data Reason: Fitting this ODE model with saemix takes about 15 minutes on my system ──────────────────────────────────────────────────────────────────────────────── ✔ | 14 | Error model fitting [6.8s] ✔ | 5 | Time step normalisation ✔ | 4 | Calculation of FOCUS chi2 error levels [0.8s] ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [3.5s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.6s] ✔ | 1 | Fitting the logistic model [0.3s] ⠇ | 1 8 | Nonlinear mixed-effects models ✖ | 1 1 13 | Nonlinear mixed-effects models [1.5s] ──────────────────────────────────────────────────────────────────────────────── Failure (test_mixed.R:5:3): Print methods work Results have changed from known value recorded in 'print_mmkin_dfop_1_mixed.txt'. old[18:21] vs new[18:21] "" "Mean fitted parameters:" "parent_0 log_k1 log_k2 g_qlogis " - " 100.06 -2.68 -5.57 0.01 " + " 100.06 -2.68 -5.58 0.01 " Skip (test_mixed.R:68:3): saemix results are reproducible for biphasic fits Reason: Fitting with saemix takes around 10 minutes when using deSolve ──────────────────────────────────────────────────────────────────────────────── ✔ | 3 | Test dataset classes mkinds and mkindsg ✔ | 10 | Special cases of mkinfit calls [0.6s] ✔ | 3 | mkinfit features [1.1s] ✔ | 8 | mkinmod model generation and printing [0.2s] ✔ | 3 | Model predictions with mkinpredict [0.3s] ✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.1s] ✔ | 9 | Nonlinear mixed-effects models with nlme [8.5s] ✖ | 2 14 | Plotting [1.5s] ──────────────────────────────────────────────────────────────────────────────── Failure (test_plot.R:42:3): Plotting mkinfit, mmkin and mixed model objects is reproducible Snapshot of `testcase` to 'plot/mixed-model-fit-for-nlme-object.svg' has changed Run `testthat::snapshot_review('plot/')` to review changes Backtrace: 1. vdiffr::expect_doppelganger(...) at test_plot.R:42:2 3. testthat::expect_snapshot_file(...) Failure (test_plot.R:50:3): Plotting mkinfit, mmkin and mixed model objects is reproducible Snapshot of `testcase` to 'plot/mixed-model-fit-for-saem-object-with-mkin-transformations.svg' has changed Run `testthat::snapshot_review('plot/')` to review changes Backtrace: 1. vdiffr::expect_doppelganger(...) at test_plot.R:50:2 3. testthat::expect_snapshot_file(...) ──────────────────────────────────────────────────────────────────────────────── ✔ | 4 | Residuals extracted from mkinfit models ✔ | 23 | saemix_parent [28.7s] ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [12.2s] ✔ | 7 | Fitting the SFORB model [16.1s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 4 | Summary [0.1s] ✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [19.0s] ✔ | 9 | Hypothesis tests [67.6s] ✔ | 2 | tffm0 ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.0s] ══ Results ═════════════════════════════════════════════════════════════════════ Duration: 314.2 s ── Skipped tests ────────────────────────────────────────────────────────────── • Fitting this ODE model with saemix takes about 15 minutes on my system (1) • Fitting with saemix takes around 10 minutes when using deSolve (1) [ FAIL 3 | WARN 0 | SKIP 2 | PASS 237 ]