Loading mkin
Loading required package: parallel
Testing mkin
✔ |  OK F W S | Context
✔ |   5       | AIC calculation
✔ |   2       | Export dataset for reading into CAKE
✔ |  14       | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.0 s]
✔ |   4       | Calculation of FOCUS chi2 error levels [0.5 s]
✔ |   7       | Fitting the SFORB model [3.4 s]
✔ |   5       | Analytical solutions for coupled models [3.1 s]
✔ |   5       | Calculation of Akaike weights
✔ |  14       | Confidence intervals and p-values [1.2 s]
✔ |  14       | Error model fitting [5.8 s]
✔ |   5       | Time step normalisation
✔ |   4       | Test fitting the decline of metabolites from their maximum [0.3 s]
✔ |   1       | Fitting the logistic model [0.2 s]
✔ |   5     3 | Nonlinear mixed-effects models [0.1 s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:4:3): Parent fits using saemix are correctly implemented
Reason: !saemix_available  is TRUE

Skip (test_mixed.R:94:3): Print methods work
Reason: !saemix_available  is TRUE

Skip (test_mixed.R:118:3): saem results are reproducible for biphasic fits
Reason: !saemix_available  is TRUE
────────────────────────────────────────────────────────────────────────────────
✔ |   2       | Test dataset classes mkinds and mkindsg
✔ |   1       | mkinfit features [0.3 s]
✔ |  10       | Special cases of mkinfit calls [0.3 s]
✔ |   8       | mkinmod model generation and printing [0.2 s]
✔ |   3       | Model predictions with mkinpredict [0.3 s]
✔ |  14     2 | Evaluations according to 2015 NAFTA guidance [2.2 s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_nafta.R:25:5): Test data from Appendix B are correctly evaluated
Reason: getRversion() >= "4.1.0"  is TRUE

Skip (test_nafta.R:53:5): Test data from Appendix D are correctly evaluated
Reason: getRversion() >= "4.1.0"  is TRUE
────────────────────────────────────────────────────────────────────────────────
✔ |   9       | Nonlinear mixed-effects models [7.9 s]
✔ |   0     1 | Plotting [0.7 s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_plot.R:18:3): Plotting mkinfit, mmkin and mixed model objects is reproducible
Reason: getRversion() >= "4.1.0"  is TRUE
────────────────────────────────────────────────────────────────────────────────
✔ |   4       | Residuals extracted from mkinfit models
✔ |   2       | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4 s]
✔ |   4       | Summary [0.1 s]
✔ |   1       | Summaries of old mkinfit objects
✔ |   4       | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s]
✔ |   9       | Hypothesis tests [7.7 s]
✔ |   4       | Calculation of maximum time weighted average concentrations (TWAs) [2.0 s]

══ Results ═════════════════════════════════════════════════════════════════════
Duration: 41.2 s

── Skipped tests  ──────────────────────────────────────────────────────────────
● !saemix_available  is TRUE (3)
● getRversion() >= "4.1.0"  is TRUE (3)

[ FAIL 0 | WARN 0 | SKIP 6 | PASS 160 ]