blob: 19c74bd8fb6f1b6f0d6f38c07b22cb0b0cca7775 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
|
PKGNAME := $(shell sed -n "s/Package: *\([^ ]*\)/\1/p" DESCRIPTION)
PKGVERS := $(shell sed -n "s/Version: *\([^ ]*\)/\1/p" DESCRIPTION)
PKGSRC := $(shell basename $(PWD))
TGZ := $(PKGSRC)_$(PKGVERS).tar.gz
TGZVNR := $(PKGSRC)_$(PKGVERS)-vignettes-not-rebuilt.tar.gz
# Specify the directory holding R binaries. To use an alternate R build (say a
# pre-prelease version) use `make RBIN=/path/to/other/R/` or `export RBIN=...`
# If no alternate bin folder is specified, the default is to use the folder
# containing the first instance of R on the PATH.
RBIN ?= $(shell dirname "`which R`")
# Specify package and static documentation directories for subversion on r-forge
RFSVN ?= $(HOME)/svn/kinfit.r-forge
RFDIR ?= $(RFSVN)/pkg/mkin
SDDIR ?= $(RFSVN)/www/mkin_static
# Vignettes are listed in the build target
pkgfiles = \
.Rbuildignore \
data/* \
DESCRIPTION \
man/* \
NAMESPACE \
NEWS.md \
R/* \
tests/* \
tests/testthat* \
TODO
all: build
$(TGZ): $(pkgfiles) vignettes
"$(RBIN)/R" CMD build . 2>&1 | tee build.log
$(TGZVNR): $(pkgfiles)
"$(RBIN)/R" CMD build . --no-build-vignettes;\
mv $(TGZ) $(TGZVNR)
build: $(TGZ)
build-no-vignettes: $(TGZVNR)
install: build
"$(RBIN)/R" CMD INSTALL $(TGZ)
quickinstall: build-no-vignettes
"$(RBIN)/R" CMD INSTALL $(TGZVNR)
check: build
"$(RBIN)/R" CMD check --as-cran --no-tests $(TGZ) 2>&1 | tee check.log
quickcheck: build-no-vignettes
mv $(TGZVNR) $(TGZ)
"$(RBIN)/R" CMD check --no-tests --no-build-vignettes --no-vignettes $(TGZ)
mv $(TGZ) $(TGZVNR)
clean:
$(RM) -r vignettes/*_cache
$(RM) -r vignettes/*_files
$(RM) -r vignettes/*.R
$(RM) Rplots.pdf
test: quickinstall
NOT_CRAN=true "$(RBIN)/Rscript" -e 'devtools::test()' 2>&1 | tee test.log
README.html: README.md
"$(RBIN)/Rscript" -e "rmarkdown::render('README.md', output_format = 'html_document', output_options = list(mathjax = NULL))"
vignettes/%.html: vignettes/mkin_vignettes.css vignettes/references.bib vignettes/%.Rmd
"$(RBIN)/Rscript" -e "tools::buildVignette(file = 'vignettes/$*.Rmd', dir = 'vignettes')"
vignettes: vignettes/mkin.html vignettes/FOCUS_D.html vignettes/FOCUS_L.html vignettes/FOCUS_Z.html vignettes/compiled_models.html
pd:
"$(RBIN)/Rscript" -e "pkgdown::build_site()"
git add -A
git commit -m 'Static documentation rebuilt by pkgdown' -e
r-forge:
git archive master > $(HOME)/git/mkin/mkin.tar;\
cd $(RFDIR) && rm -r `ls` && tar -xf $(HOME)/git/mkin/mkin.tar;\
rm -r $(SDDIR)/*;\
cp -a docs/* $(SDDIR);\
svn add --force .; svn rm --force `svn status | grep "\!" | cut -d " " -f 8`; cd $(RFSVN) && svn commit -m 'sync with git'
winbuilder: build
date
@echo "Uploading to R-release on win-builder"
curl -T $(TGZ) ftp://anonymous@win-builder.r-project.org/R-release/
@echo "Uploading to R-devel on win-builder"
curl -T $(TGZ) ftp://anonymous@win-builder.r-project.org/R-devel/
drat: build
"$(RBIN)/Rscript" -e "drat::insertPackage('$(TGZ)', commit = TRUE)"
submit:
@echo "\nHow about make test, make check, make pd, make winbuilder"
@echo "\nIs the DESCRIPTION file up to date?"
@echo "\nIs the NEWS.md file up to date?"
@echo "\nAre you sure you want to release to CRAN?"
@echo "\nThen make r-forge, commit leftover changes if any, tag the release and use the form at http://cran.r-project.org/submit.html"
|
