blob: 19658a8553dfd4c74332b38e4ae7f73848f1f74f (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
|
PKGNAME := $(shell sed -n "s/Package: *\([^ ]*\)/\1/p" DESCRIPTION)
PKGVERS := $(shell sed -n "s/Version: *\([^ ]*\)/\1/p" DESCRIPTION)
PKGSRC := $(shell basename $(PWD))
TGZ := ../$(PKGSRC)_$(PKGVERS).tar.gz
TGZVNR := ../$(PKGSRC)_$(PKGVERS)-vignettes-not-rebuilt.tar.gz
# Specify the directory holding R binaries. To use an alternate R build (say a
# pre-prelease version) use `make RBIN=/path/to/other/R/` or `export RBIN=...`
# If no alternate bin folder is specified, the default is to use the folder
# containing the first instance of R on the PATH.
RBIN ?= $(shell dirname "`which R`")
# Specify package and static documentation directories for subversion on r-forge
RFSVN ?= $(HOME)/svn/kinfit.r-forge
RFDIR ?= $(RFSVN)/pkg/mkin
SDDIR ?= $(RFSVN)/www/mkin_static
# Vignettes are listed in the build target
pkgfiles = \
.Rbuildignore \
data/* \
DESCRIPTION \
man/* \
NAMESPACE \
NEWS.md \
R/* \
README.md \
tests/* \
tests/testthat* \
TODO
all: build
README.md: README.Rmd
"$(RBIN)/Rscript" -e 'require(knitr); knit("README.Rmd")'
$(TGZ): $(pkgfiles) vignettes/*.html vignettes/*.pdf
cd ..;\
"$(RBIN)/R" CMD build $(PKGSRC) 2>&1 | tee $(PKGNAME)/build.log
$(TGZVNR): $(pkgfiles)
cd ..;\
"$(RBIN)/R" CMD build $(PKGSRC) --no-build-vignettes;\
cd $(PKGSRC);\
mv $(TGZ) $(TGZVNR)
build: $(TGZ)
build-no-vignettes: $(TGZVNR)
install: build
"$(RBIN)/R" CMD INSTALL $(TGZ)
quickinstall: build-no-vignettes
"$(RBIN)/R" CMD INSTALL $(TGZVNR)
check: build
"$(RBIN)/R" CMD check --as-cran --no-tests $(TGZ) 2>&1 | tee check.log
quickcheck: build-no-vignettes
mv $(TGZVNR) $(TGZ)
"$(RBIN)/R" CMD check --no-tests --no-build-vignettes --no-vignettes $(TGZ)
mv $(TGZ) $(TGZVNR)
clean:
$(RM) -r $(PKGNAME).Rcheck/
$(RM) -r vignettes/*.fls
$(RM) -r vignettes/*.fdb_latexmk
$(RM) -r vignettes/*_cache
$(RM) -r vignettes/*_files
$(RM) -r vignettes/*-concordance.tex
$(RM) -r vignettes/*.syntex.gz
$(RM) Rplots.pdf
test: quickinstall
cd tests;\
"$(RBIN)/Rscript" testthat.R 2>&1 | tee ../test.log
vignettes/%.pdf: vignettes/header.tex vignettes/references.bib vignettes/%.Rnw
"$(RBIN)/Rscript" -e "tools::buildVignette(file = 'vignettes/$*.Rnw', dir = 'vignettes')"
vignettes/%.html: vignettes/mkin_vignettes.css vignettes/%.Rmd
"$(RBIN)/Rscript" -e "tools::buildVignette(file = 'vignettes/$*.Rmd', dir = 'vignettes')"
vignettes: quickinstall vignettes/mkin.pdf vignettes/FOCUS_D.html vignettes/FOCUS_L.html vignettes/FOCUS_Z.pdf vignettes/compiled_models.html
sd:
rm -rf $(SDDIR)/*
@echo Now execute
@echo "\nlibrary(staticdocs); build_site(site_path = '$(SDDIR)')\n"
$(RBIN)/R
cp -r figure $(SDDIR)
r-forge: sd
cd $(SDDIR) && svn add --force .
git archive master > $(HOME)/mkin.tar;\
cd $(RFDIR) && rm -r `ls` && tar -xf $(HOME)/mkin.tar;\
svn add --force .; svn rm --force `svn status | grep "\!" | cut -d " " -f 8`; cd $(RFSVN) && svn commit -m 'sync with git'
git add -A
git commit -m 'Vignettes rebuilt by staticdocs::build_site() for static documentation on r-forge'
winbuilder: build
date
@echo "Uploading to R-release on win-builder"
curl -T $(TGZ) ftp://anonymous@win-builder.r-project.org/R-release/
@echo "Uploading to R-devel on win-builder"
curl -T $(TGZ) ftp://anonymous@win-builder.r-project.org/R-devel/
submit:
@echo "\nHow about make test, make check, make winbuilder"
@echo "\nIs the DESCRIPTION file up to date?"
@echo "\nIs the NEWS.md file up to date?"
@echo "\nAre you sure you want to release to CRAN?"
@echo "\nThen make r-forge, commit leftover changes if any, tag the release and use the form at http://cran.r-project.org/submit.html"
|
