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#' Hierarchical kinetics template
#'
#' R markdown format for setting up hierarchical kinetics based on a template
#' provided with the mkin package.
#'
#' @inheritParams rmarkdown::pdf_document
#' @param ... Arguments to \code{rmarkdown::pdf_document}
#'
#' @return R Markdown output format to pass to
#' \code{\link[rmarkdown:render]{render}}
#'
#' @examples
#'
#' \dontrun{
#' library(rmarkdown)
#' draft("New analysis.rmd", template = "hierarchical_kinetics", package = "mkin")
#' }
#'
#' @export
hierarchical_kinetics <- function(..., keep_tex = FALSE) {
if (getRversion() < "4.1.0")
stop("You need R with version > 4.1.0 to compile this document")
if (!requireNamespace("knitr")) stop("Please install the knitr package to use this template")
if (!requireNamespace("rmarkdown")) stop("Please install the rmarkdown package to use this template")
knitr::opts_chunk$set(echo = FALSE, cache = TRUE, comment = "", tidy = FALSE, echo = TRUE)
knitr::opts_chunk$set(fig.align = "center", fig.pos = "H")
options(knitr.kable.NA = "")
fmt <- rmarkdown::pdf_document(...,
keep_tex = keep_tex,
toc = TRUE,
toc_depth = 3,
includes = rmarkdown::includes(in_header = "header.tex"),
extra_dependencies = c("float", "listing", "framed")
)
return(fmt)
}
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