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url: https://pkgdown.jrwb.de/mkin
development:
mode: release
version_label: default
template:
bootstrap: 5
bootswatch: spacelab
news:
cran_dates: false
reference:
- title: Main functions
desc: Essential functionality
contents:
- mkinmod
- mkinfit
- mmkin
- mhmkin
- title: Generics
desc: Generic functions introduced by the package
contents:
- parms
- status
- illparms
- endpoints
- aw
- title: Show results
desc: Functions working with mkinfit objects
contents:
- plot.mkinfit
- summary.mkinfit
- confint.mkinfit
- update.mkinfit
- lrtest.mkinfit
- loftest
- mkinerrmin
- CAKE_export
- title: Work with mmkin objects
desc: Functions working with aggregated results
contents:
- "`[.mmkin`"
- plot.mmkin
- AIC.mmkin
- summary.mmkin
- title: Mixed models
desc: Create and work with nonlinear hierarchical models
contents:
- hierarchical_kinetics
- read_spreadsheet
- nlme.mmkin
- saem.mmkin
- "`[.mhmkin`"
- plot.mixed.mmkin
- summary.nlme.mmkin
- summary.saem.mmkin
- anova.saem.mmkin
- logLik.saem.mmkin
- nlme_function
- get_deg_func
- saemix_model
- mixed
- intervals
- intervals.saem.mmkin
- multistart
- llhist
- parplot
- check_failed
- title: Datasets and known results
contents:
- ds_mixed
- D24_2014
- dimethenamid_2018
- FOCUS_2006_A
- FOCUS_2006_SFO_ref_A_to_F
- FOCUS_2006_FOMC_ref_A_to_F
- FOCUS_2006_HS_ref_A_to_F
- FOCUS_2006_DFOP_ref_A_to_B
- NAFTA_SOP_2015
- NAFTA_SOP_Attachment
- mccall81_245T
- schaefer07_complex_case
- synthetic_data_for_UBA_2014
- experimental_data_for_UBA_2019
- test_data_from_UBA_2014
- focus_soil_moisture
- mkinds
- mkindsg
- title: NAFTA guidance
contents:
- nafta
- print.nafta
- plot.nafta
- title: Utility functions
contents:
- summary_listing
- f_time_norm_focus
- set_nd_nq
- max_twa_parent
- mkin_wide_to_long
- mkin_long_to_wide
- title: Helper functions mainly used internally
contents:
- mkinpredict
- transform_odeparms
- ilr
- logLik.mkinfit
- residuals.mkinfit
- nobs.mkinfit
- mkinresplot
- mkinparplot
- mkinerrplot
- mean_degparms
- create_deg_func
- title: Analytical solutions
desc: Parent only model solutions
contents:
- SFO.solution
- FOMC.solution
- DFOP.solution
- SFORB.solution
- HS.solution
- IORE.solution
- logistic.solution
- title: Generate synthetic datasets
contents:
- add_err
- sigma_twocomp
- title: Deprecated functions
desc: Functions that have been superseded
contents:
- mkinplot
navbar:
title: ~
type: default
left:
- text: Reference
href: reference/index.html
- text: Articles
menu:
- text: Introduction to mkin
href: articles/mkin.html
- text: "-------"
- text: Example evaluations with (generalised) nonlinear least squares
- text: Example evaluation of FOCUS Example Dataset D
href: articles/FOCUS_D.html
- text: Example evaluation of FOCUS Laboratory Data L1 to L3
href: articles/FOCUS_L.html
- text: Example evaluation of FOCUS Example Dataset Z
href: articles/web_only/FOCUS_Z.html
- text: "-------"
- text: Example evaluations with hierarchical models (nonlinear mixed-effects models)
- text: Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P
href: articles/prebuilt/2022_dmta_parent.html
- text: Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P
href: articles/prebuilt/2022_dmta_pathway.html
- text: Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione
href: articles/prebuilt/2023_mesotrione_parent.html
- text: Testing hierarchical pathway kinetics with residue data on cyantraniliprole
href: articles/prebuilt/2022_cyan_pathway.html
- text: Comparison of saemix and nlme evaluations of dimethenamid data from 2018
href: articles/web_only/dimethenamid_2018.html
- text: Short demo of the multistart method
href: articles/web_only/multistart.html
- text: "-------"
- text: Performance
- text: Performance benefit by using compiled model definitions in mkin
href: articles/web_only/compiled_models.html
- text: Benchmark timings for mkin
href: articles/web_only/benchmarks.html
- text: Benchmark timings for saem.mmkin
href: articles/web_only/saem_benchmarks.html
- text: "-------"
- text: Miscellaneous
- text: Calculation of time weighted average concentrations with mkin
href: articles/twa.html
- text: Example evaluation of NAFTA SOP Attachment examples
href: articles/web_only/NAFTA_examples.html
- text: Test coverage
href: coverage/coverage.html
- text: News
href: news/index.html
|
