1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
|
<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>A class for dataset groups for mkin — mkindsg • mkin</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="A class for dataset groups for mkin — mkindsg"><meta property="og:description" content="A container for working with datasets that share at least one compound,
so that combined evaluations are desirable.
Time normalisation factors are initialised with a value of 1 for each
dataset if no data are supplied."><meta name="robots" content="noindex"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]--></head><body data-spy="scroll" data-target="#toc">
<div class="container template-reference-topic">
<header><div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
<span class="sr-only">Toggle navigation</span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
<span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.1.2</span>
</span>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav"><li>
<a href="../reference/index.html">Functions and data</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
Articles
<span class="caret"></span>
</a>
<ul class="dropdown-menu" role="menu"><li>
<a href="../articles/mkin.html">Introduction to mkin</a>
</li>
<li>
<a href="../articles/FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a>
</li>
<li>
<a href="../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
</li>
<li>
<a href="../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
</li>
<li>
<a href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
</li>
<li>
<a href="../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
</li>
<li>
<a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
</li>
<li>
<a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
</li>
<li>
<a href="../articles/web_only/benchmarks.html">Some benchmark timings</a>
</li>
</ul></li>
<li>
<a href="../news/index.html">News</a>
</li>
</ul><ul class="nav navbar-nav navbar-right"><li>
<a href="https://github.com/jranke/mkin/" class="external-link">
<span class="fab fa-github fa-lg"></span>
</a>
</li>
</ul></div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
</header><div class="row">
<div class="col-md-9 contents">
<div class="page-header">
<h1>A class for dataset groups for mkin</h1>
<small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/R/mkinds.R" class="external-link"><code>R/mkinds.R</code></a></small>
<div class="hidden name"><code>mkindsg.Rd</code></div>
</div>
<div class="ref-description">
<p>A container for working with datasets that share at least one compound,
so that combined evaluations are desirable.</p>
<p>Time normalisation factors are initialised with a value of 1 for each
dataset if no data are supplied.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for mkindsg</span></span>
<span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">x</span>, data <span class="op">=</span> <span class="cn">FALSE</span>, verbose <span class="op">=</span> <span class="va">data</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>x</dt>
<dd><p>An mkindsg object.</p></dd>
<dt>data</dt>
<dd><p>Should the mkinds objects be printed with their data?</p></dd>
<dt>verbose</dt>
<dd><p>Should the mkinds objects be printed?</p></dd>
<dt>...</dt>
<dd><p>Not used.</p></dd>
</dl></div>
<div id="public-fields">
<h2>Public fields</h2>
<p></p><div class="r6-fields"><dl><dt><code>title</code></dt>
<dd><p>A title for the dataset group</p></dd>
<dt><code>ds</code></dt>
<dd><p>A list of mkinds objects</p></dd>
<dt><code>observed_n</code></dt>
<dd><p>Occurrence counts of compounds in datasets</p></dd>
<dt><code>f_time_norm</code></dt>
<dd><p>Time normalisation factors</p></dd>
<dt><code>meta</code></dt>
<dd><p>A data frame with a row for each dataset,
containing additional information in the form
of categorical data (factors) or numerical data
(e.g. temperature, moisture,
or covariates like soil pH).</p></dd>
</dl><p></p></div>
</div>
<div id="methods">
<h2>Methods</h2>
<div class="section">
<h3 id="public-methods">Public methods<a class="anchor" aria-label="anchor" href="#public-methods"></a></h3>
<ul><li><p><a href="#method-mkindsg-new"><code>mkindsg$new()</code></a></p></li>
<li><p><a href="#method-mkindsg-clone"><code>mkindsg$clone()</code></a></p></li>
</ul></div><p></p><hr><a id="method-mkindsg-new"></a><div class="section">
<h3 id="method-new-">Method <code>new()</code><a class="anchor" aria-label="anchor" href="#method-new-"></a></h3>
<p>Create a new mkindsg object</p><div class="section">
<h4 id="usage">Usage<a class="anchor" aria-label="anchor" href="#usage"></a></h4>
<p></p><div class="r"><div class="sourceCode"><pre><code><span><span class="va"><a href="../reference/mkindsg.html">mkindsg</a></span><span class="op">$</span><span class="fu">new</span><span class="op">(</span>title <span class="op">=</span> <span class="st">""</span>, <span class="va">ds</span>, f_time_norm <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">1</span>, <span class="fu"><a href="https://rdrr.io/r/base/length.html" class="external-link">length</a></span><span class="op">(</span><span class="va">ds</span><span class="op">)</span><span class="op">)</span>, <span class="va">meta</span><span class="op">)</span></span></code></pre></div><p></p></div>
</div>
<div class="section">
<h4 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h4>
<p></p><div class="arguments"><dl><dt><code>title</code></dt>
<dd><p>The title</p></dd>
<dt><code>ds</code></dt>
<dd><p>A list of mkinds objects</p></dd>
<dt><code>f_time_norm</code></dt>
<dd><p>Time normalisation factors</p></dd>
<dt><code>meta</code></dt>
<dd><p>The meta data</p></dd>
</dl><p></p></div>
</div>
</div><p></p><hr><a id="method-mkindsg-clone"></a><div class="section">
<h3 id="method-clone-">Method <code>clone()</code><a class="anchor" aria-label="anchor" href="#method-clone-"></a></h3>
<p>The objects of this class are cloneable with this method.</p><div class="section">
<h4 id="usage-1">Usage<a class="anchor" aria-label="anchor" href="#usage-1"></a></h4>
<p></p><div class="r"><div class="sourceCode"><pre><code><span><span class="va">mkindsg</span><span class="op">$</span><span class="fu">clone</span><span class="op">(</span>deep <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div><p></p></div>
</div>
<div class="section">
<h4 id="arguments-1">Arguments<a class="anchor" aria-label="anchor" href="#arguments-1"></a></h4>
<p></p><div class="arguments"><dl><dt><code>deep</code></dt>
<dd><p>Whether to make a deep clone.</p></dd>
</dl><p></p></div>
</div>
</div>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span></span></span>
<span class="r-in"><span><span class="va">mdsg</span> <span class="op"><-</span> <span class="va">mkindsg</span><span class="op">$</span><span class="fu">new</span><span class="op">(</span><span class="st">"Experimental X"</span>, <span class="va">experimental_data_for_UBA_2019</span><span class="op">[</span><span class="fl">6</span><span class="op">:</span><span class="fl">10</span><span class="op">]</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">mdsg</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#></span> <mkindsg> holding 5 mkinds objects</span>
<span class="r-out co"><span class="r-pr">#></span> Title $title: Experimental X </span>
<span class="r-out co"><span class="r-pr">#></span> Occurrence of observed compounds $observed_n:</span>
<span class="r-out co"><span class="r-pr">#></span> parent A1 </span>
<span class="r-out co"><span class="r-pr">#></span> 5 5 </span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">mdsg</span>, verbose <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#></span> <mkindsg> holding 5 mkinds objects</span>
<span class="r-out co"><span class="r-pr">#></span> Title $title: Experimental X </span>
<span class="r-out co"><span class="r-pr">#></span> Occurrence of observed compounds $observed_n:</span>
<span class="r-out co"><span class="r-pr">#></span> parent A1 </span>
<span class="r-out co"><span class="r-pr">#></span> 5 5 </span>
<span class="r-out co"><span class="r-pr">#></span> </span>
<span class="r-out co"><span class="r-pr">#></span> Datasets $ds:</span>
<span class="r-out co"><span class="r-pr">#></span> <mkinds> with $title: Soil 6 </span>
<span class="r-out co"><span class="r-pr">#></span> Observed compounds $observed: parent, A1 </span>
<span class="r-out co"><span class="r-pr">#></span> Sampling times $sampling_times:</span>
<span class="r-out co"><span class="r-pr">#></span> 0, 3, 6, 10, 20, 34, 55, 90, 112, 132 </span>
<span class="r-out co"><span class="r-pr">#></span> With a maximum of 2 replicates</span>
<span class="r-out co"><span class="r-pr">#></span> Time unit: days </span>
<span class="r-out co"><span class="r-pr">#></span> Observation unit: \%AR </span>
<span class="r-out co"><span class="r-pr">#></span> </span>
<span class="r-out co"><span class="r-pr">#></span> <mkinds> with $title: Soil 7 </span>
<span class="r-out co"><span class="r-pr">#></span> Observed compounds $observed: parent, A1 </span>
<span class="r-out co"><span class="r-pr">#></span> Sampling times $sampling_times:</span>
<span class="r-out co"><span class="r-pr">#></span> 0, 3, 7, 14, 30, 60, 90, 120, 180 </span>
<span class="r-out co"><span class="r-pr">#></span> With a maximum of 2 replicates</span>
<span class="r-out co"><span class="r-pr">#></span> Time unit: days </span>
<span class="r-out co"><span class="r-pr">#></span> Observation unit: \%AR </span>
<span class="r-out co"><span class="r-pr">#></span> </span>
<span class="r-out co"><span class="r-pr">#></span> <mkinds> with $title: Soil 8 </span>
<span class="r-out co"><span class="r-pr">#></span> Observed compounds $observed: parent, A1 </span>
<span class="r-out co"><span class="r-pr">#></span> Sampling times $sampling_times:</span>
<span class="r-out co"><span class="r-pr">#></span> 0, 1, 3, 8, 14, 27, 48, 70 </span>
<span class="r-out co"><span class="r-pr">#></span> With a maximum of 2 replicates</span>
<span class="r-out co"><span class="r-pr">#></span> Time unit: days </span>
<span class="r-out co"><span class="r-pr">#></span> Observation unit: \%AR </span>
<span class="r-out co"><span class="r-pr">#></span> </span>
<span class="r-out co"><span class="r-pr">#></span> <mkinds> with $title: Soil 9 </span>
<span class="r-out co"><span class="r-pr">#></span> Observed compounds $observed: parent, A1 </span>
<span class="r-out co"><span class="r-pr">#></span> Sampling times $sampling_times:</span>
<span class="r-out co"><span class="r-pr">#></span> 0, 1, 3, 8, 14, 27, 48, 70, 91, 120 </span>
<span class="r-out co"><span class="r-pr">#></span> With a maximum of 2 replicates</span>
<span class="r-out co"><span class="r-pr">#></span> Time unit: days </span>
<span class="r-out co"><span class="r-pr">#></span> Observation unit: \%AR </span>
<span class="r-out co"><span class="r-pr">#></span> </span>
<span class="r-out co"><span class="r-pr">#></span> <mkinds> with $title: Soil 10 </span>
<span class="r-out co"><span class="r-pr">#></span> Observed compounds $observed: parent, A1 </span>
<span class="r-out co"><span class="r-pr">#></span> Sampling times $sampling_times:</span>
<span class="r-out co"><span class="r-pr">#></span> 0, 8, 14, 21, 41, 63, 91, 120 </span>
<span class="r-out co"><span class="r-pr">#></span> With a maximum of 2 replicates</span>
<span class="r-out co"><span class="r-pr">#></span> Time unit: days </span>
<span class="r-out co"><span class="r-pr">#></span> Observation unit: \%AR </span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">mdsg</span>, verbose <span class="op">=</span> <span class="cn">TRUE</span>, data <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#></span> <mkindsg> holding 5 mkinds objects</span>
<span class="r-out co"><span class="r-pr">#></span> Title $title: Experimental X </span>
<span class="r-out co"><span class="r-pr">#></span> Occurrence of observed compounds $observed_n:</span>
<span class="r-out co"><span class="r-pr">#></span> parent A1 </span>
<span class="r-out co"><span class="r-pr">#></span> 5 5 </span>
<span class="r-out co"><span class="r-pr">#></span> </span>
<span class="r-out co"><span class="r-pr">#></span> Datasets $ds:</span>
<span class="r-out co"><span class="r-pr">#></span> <mkinds> with $title: Soil 6 </span>
<span class="r-out co"><span class="r-pr">#></span> Observed compounds $observed: parent, A1 </span>
<span class="r-out co"><span class="r-pr">#></span> Sampling times $sampling_times:</span>
<span class="r-out co"><span class="r-pr">#></span> 0, 3, 6, 10, 20, 34, 55, 90, 112, 132 </span>
<span class="r-out co"><span class="r-pr">#></span> With a maximum of 2 replicates</span>
<span class="r-out co"><span class="r-pr">#></span> Time unit: days </span>
<span class="r-out co"><span class="r-pr">#></span> Observation unit: \%AR </span>
<span class="r-out co"><span class="r-pr">#></span> time parent A1</span>
<span class="r-out co"><span class="r-pr">#></span> 1 0 97.2 NA</span>
<span class="r-out co"><span class="r-pr">#></span> 2 0 96.4 NA</span>
<span class="r-out co"><span class="r-pr">#></span> 3 3 71.1 4.3</span>
<span class="r-out co"><span class="r-pr">#></span> 4 3 69.2 4.6</span>
<span class="r-out co"><span class="r-pr">#></span> 5 6 58.1 7.0</span>
<span class="r-out co"><span class="r-pr">#></span> 6 6 56.6 7.2</span>
<span class="r-out co"><span class="r-pr">#></span> 7 10 44.4 8.2</span>
<span class="r-out co"><span class="r-pr">#></span> 8 10 43.4 8.0</span>
<span class="r-out co"><span class="r-pr">#></span> 9 20 33.3 11.0</span>
<span class="r-out co"><span class="r-pr">#></span> 10 20 29.2 13.7</span>
<span class="r-out co"><span class="r-pr">#></span> 11 34 17.6 11.5</span>
<span class="r-out co"><span class="r-pr">#></span> 12 34 18.0 12.7</span>
<span class="r-out co"><span class="r-pr">#></span> 13 55 10.5 14.9</span>
<span class="r-out co"><span class="r-pr">#></span> 14 55 9.3 14.5</span>
<span class="r-out co"><span class="r-pr">#></span> 15 90 4.5 12.1</span>
<span class="r-out co"><span class="r-pr">#></span> 16 90 4.7 12.3</span>
<span class="r-out co"><span class="r-pr">#></span> 17 112 3.0 9.9</span>
<span class="r-out co"><span class="r-pr">#></span> 18 112 3.4 10.2</span>
<span class="r-out co"><span class="r-pr">#></span> 19 132 2.3 8.8</span>
<span class="r-out co"><span class="r-pr">#></span> 20 132 2.7 7.8</span>
<span class="r-out co"><span class="r-pr">#></span> </span>
<span class="r-out co"><span class="r-pr">#></span> <mkinds> with $title: Soil 7 </span>
<span class="r-out co"><span class="r-pr">#></span> Observed compounds $observed: parent, A1 </span>
<span class="r-out co"><span class="r-pr">#></span> Sampling times $sampling_times:</span>
<span class="r-out co"><span class="r-pr">#></span> 0, 3, 7, 14, 30, 60, 90, 120, 180 </span>
<span class="r-out co"><span class="r-pr">#></span> With a maximum of 2 replicates</span>
<span class="r-out co"><span class="r-pr">#></span> Time unit: days </span>
<span class="r-out co"><span class="r-pr">#></span> Observation unit: \%AR </span>
<span class="r-out co"><span class="r-pr">#></span> time parent A1</span>
<span class="r-out co"><span class="r-pr">#></span> 1 0 93.6 NA</span>
<span class="r-out co"><span class="r-pr">#></span> 2 0 92.3 NA</span>
<span class="r-out co"><span class="r-pr">#></span> 3 3 87.0 3.9</span>
<span class="r-out co"><span class="r-pr">#></span> 4 3 82.2 3.1</span>
<span class="r-out co"><span class="r-pr">#></span> 5 7 74.0 6.9</span>
<span class="r-out co"><span class="r-pr">#></span> 6 7 73.9 6.6</span>
<span class="r-out co"><span class="r-pr">#></span> 7 14 64.2 10.4</span>
<span class="r-out co"><span class="r-pr">#></span> 8 14 69.5 8.3</span>
<span class="r-out co"><span class="r-pr">#></span> 9 30 54.0 14.4</span>
<span class="r-out co"><span class="r-pr">#></span> 10 30 54.6 13.7</span>
<span class="r-out co"><span class="r-pr">#></span> 11 60 41.1 22.1</span>
<span class="r-out co"><span class="r-pr">#></span> 12 60 38.4 22.3</span>
<span class="r-out co"><span class="r-pr">#></span> 13 90 32.5 27.5</span>
<span class="r-out co"><span class="r-pr">#></span> 14 90 35.5 25.4</span>
<span class="r-out co"><span class="r-pr">#></span> 15 120 28.1 28.0</span>
<span class="r-out co"><span class="r-pr">#></span> 16 120 29.0 26.6</span>
<span class="r-out co"><span class="r-pr">#></span> 17 180 26.5 25.8</span>
<span class="r-out co"><span class="r-pr">#></span> 18 180 27.6 25.3</span>
<span class="r-out co"><span class="r-pr">#></span> </span>
<span class="r-out co"><span class="r-pr">#></span> <mkinds> with $title: Soil 8 </span>
<span class="r-out co"><span class="r-pr">#></span> Observed compounds $observed: parent, A1 </span>
<span class="r-out co"><span class="r-pr">#></span> Sampling times $sampling_times:</span>
<span class="r-out co"><span class="r-pr">#></span> 0, 1, 3, 8, 14, 27, 48, 70 </span>
<span class="r-out co"><span class="r-pr">#></span> With a maximum of 2 replicates</span>
<span class="r-out co"><span class="r-pr">#></span> Time unit: days </span>
<span class="r-out co"><span class="r-pr">#></span> Observation unit: \%AR </span>
<span class="r-out co"><span class="r-pr">#></span> time parent A1</span>
<span class="r-out co"><span class="r-pr">#></span> 1 0 91.9 NA</span>
<span class="r-out co"><span class="r-pr">#></span> 2 0 90.8 NA</span>
<span class="r-out co"><span class="r-pr">#></span> 3 1 64.9 9.6</span>
<span class="r-out co"><span class="r-pr">#></span> 4 1 66.2 7.7</span>
<span class="r-out co"><span class="r-pr">#></span> 5 3 43.5 15.0</span>
<span class="r-out co"><span class="r-pr">#></span> 6 3 44.1 15.1</span>
<span class="r-out co"><span class="r-pr">#></span> 7 8 18.3 21.2</span>
<span class="r-out co"><span class="r-pr">#></span> 8 8 18.1 21.1</span>
<span class="r-out co"><span class="r-pr">#></span> 9 14 10.2 19.7</span>
<span class="r-out co"><span class="r-pr">#></span> 10 14 10.8 18.9</span>
<span class="r-out co"><span class="r-pr">#></span> 11 27 4.9 17.5</span>
<span class="r-out co"><span class="r-pr">#></span> 12 27 3.3 15.9</span>
<span class="r-out co"><span class="r-pr">#></span> 13 48 1.6 9.5</span>
<span class="r-out co"><span class="r-pr">#></span> 14 48 1.5 9.8</span>
<span class="r-out co"><span class="r-pr">#></span> 15 70 1.1 6.2</span>
<span class="r-out co"><span class="r-pr">#></span> 16 70 0.9 6.1</span>
<span class="r-out co"><span class="r-pr">#></span> </span>
<span class="r-out co"><span class="r-pr">#></span> <mkinds> with $title: Soil 9 </span>
<span class="r-out co"><span class="r-pr">#></span> Observed compounds $observed: parent, A1 </span>
<span class="r-out co"><span class="r-pr">#></span> Sampling times $sampling_times:</span>
<span class="r-out co"><span class="r-pr">#></span> 0, 1, 3, 8, 14, 27, 48, 70, 91, 120 </span>
<span class="r-out co"><span class="r-pr">#></span> With a maximum of 2 replicates</span>
<span class="r-out co"><span class="r-pr">#></span> Time unit: days </span>
<span class="r-out co"><span class="r-pr">#></span> Observation unit: \%AR </span>
<span class="r-out co"><span class="r-pr">#></span> time parent A1</span>
<span class="r-out co"><span class="r-pr">#></span> 1 0 99.8 NA</span>
<span class="r-out co"><span class="r-pr">#></span> 2 0 98.3 NA</span>
<span class="r-out co"><span class="r-pr">#></span> 3 1 77.1 4.2</span>
<span class="r-out co"><span class="r-pr">#></span> 4 1 77.2 3.9</span>
<span class="r-out co"><span class="r-pr">#></span> 5 3 59.0 7.4</span>
<span class="r-out co"><span class="r-pr">#></span> 6 3 58.1 7.9</span>
<span class="r-out co"><span class="r-pr">#></span> 7 8 27.4 14.5</span>
<span class="r-out co"><span class="r-pr">#></span> 8 8 29.2 13.7</span>
<span class="r-out co"><span class="r-pr">#></span> 9 14 19.1 14.2</span>
<span class="r-out co"><span class="r-pr">#></span> 10 14 29.6 12.2</span>
<span class="r-out co"><span class="r-pr">#></span> 11 27 10.1 13.7</span>
<span class="r-out co"><span class="r-pr">#></span> 12 27 18.2 13.2</span>
<span class="r-out co"><span class="r-pr">#></span> 13 48 4.5 13.6</span>
<span class="r-out co"><span class="r-pr">#></span> 14 48 9.1 15.4</span>
<span class="r-out co"><span class="r-pr">#></span> 15 70 2.3 10.4</span>
<span class="r-out co"><span class="r-pr">#></span> 16 70 2.9 11.6</span>
<span class="r-out co"><span class="r-pr">#></span> 17 91 2.0 10.0</span>
<span class="r-out co"><span class="r-pr">#></span> 18 91 1.8 9.5</span>
<span class="r-out co"><span class="r-pr">#></span> 19 120 2.0 9.1</span>
<span class="r-out co"><span class="r-pr">#></span> 20 120 2.2 9.0</span>
<span class="r-out co"><span class="r-pr">#></span> </span>
<span class="r-out co"><span class="r-pr">#></span> <mkinds> with $title: Soil 10 </span>
<span class="r-out co"><span class="r-pr">#></span> Observed compounds $observed: parent, A1 </span>
<span class="r-out co"><span class="r-pr">#></span> Sampling times $sampling_times:</span>
<span class="r-out co"><span class="r-pr">#></span> 0, 8, 14, 21, 41, 63, 91, 120 </span>
<span class="r-out co"><span class="r-pr">#></span> With a maximum of 2 replicates</span>
<span class="r-out co"><span class="r-pr">#></span> Time unit: days </span>
<span class="r-out co"><span class="r-pr">#></span> Observation unit: \%AR </span>
<span class="r-out co"><span class="r-pr">#></span> time parent A1</span>
<span class="r-out co"><span class="r-pr">#></span> 1 0 96.1 NA</span>
<span class="r-out co"><span class="r-pr">#></span> 2 0 94.3 NA</span>
<span class="r-out co"><span class="r-pr">#></span> 3 8 73.9 3.3</span>
<span class="r-out co"><span class="r-pr">#></span> 4 8 73.9 3.4</span>
<span class="r-out co"><span class="r-pr">#></span> 5 14 69.4 3.9</span>
<span class="r-out co"><span class="r-pr">#></span> 6 14 73.1 2.9</span>
<span class="r-out co"><span class="r-pr">#></span> 7 21 65.6 6.4</span>
<span class="r-out co"><span class="r-pr">#></span> 8 21 65.3 7.2</span>
<span class="r-out co"><span class="r-pr">#></span> 9 41 55.9 9.1</span>
<span class="r-out co"><span class="r-pr">#></span> 10 41 54.4 8.5</span>
<span class="r-out co"><span class="r-pr">#></span> 11 63 47.0 11.7</span>
<span class="r-out co"><span class="r-pr">#></span> 12 63 49.3 12.0</span>
<span class="r-out co"><span class="r-pr">#></span> 13 91 44.7 13.3</span>
<span class="r-out co"><span class="r-pr">#></span> 14 91 46.7 13.2</span>
<span class="r-out co"><span class="r-pr">#></span> 15 120 42.1 14.3</span>
<span class="r-out co"><span class="r-pr">#></span> 16 120 41.3 12.1</span>
<span class="r-in"><span></span></span>
</code></pre></div>
</div>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
<nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2>
</nav></div>
</div>
<footer><div class="copyright">
<p></p><p>Developed by Johannes Ranke.</p>
</div>
<div class="pkgdown">
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.6.</p>
</div>
</footer></div>
</body></html>
|
