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<h1>Export a list of datasets format to a CAKE study file</h1>
<small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/R/CAKE_export.R" class="external-link"><code>R/CAKE_export.R</code></a></small>
<div class="d-none name"><code>CAKE_export.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>In addition to the datasets, the pathways in the degradation model can be
specified as well.</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">CAKE_export</span><span class="op">(</span></span>
<span> <span class="va">ds</span>,</span>
<span> map <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span>parent <span class="op">=</span> <span class="st">"Parent"</span><span class="op">)</span>,</span>
<span> links <span class="op">=</span> <span class="cn">NA</span>,</span>
<span> filename <span class="op">=</span> <span class="st">"CAKE_export.csf"</span>,</span>
<span> path <span class="op">=</span> <span class="st">"."</span>,</span>
<span> overwrite <span class="op">=</span> <span class="cn">FALSE</span>,</span>
<span> study <span class="op">=</span> <span class="st">"Degradinol aerobic soil degradation"</span>,</span>
<span> description <span class="op">=</span> <span class="st">""</span>,</span>
<span> time_unit <span class="op">=</span> <span class="st">"days"</span>,</span>
<span> res_unit <span class="op">=</span> <span class="st">"% AR"</span>,</span>
<span> comment <span class="op">=</span> <span class="st">""</span>,</span>
<span> date <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.Date</a></span><span class="op">(</span><span class="op">)</span>,</span>
<span> optimiser <span class="op">=</span> <span class="st">"IRLS"</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt id="arg-ds">ds<a class="anchor" aria-label="anchor" href="#arg-ds"></a></dt>
<dd><p>A named list of datasets in long format as compatible with
<code><a href="mkinfit.html">mkinfit</a></code>.</p></dd>
<dt id="arg-map">map<a class="anchor" aria-label="anchor" href="#arg-map"></a></dt>
<dd><p>A character vector with CAKE compartment names (Parent, A1, ...),
named with the names used in the list of datasets.</p></dd>
<dt id="arg-links">links<a class="anchor" aria-label="anchor" href="#arg-links"></a></dt>
<dd><p>An optional character vector of target compartments, named with
the names of the source compartments. In order to make this easier, the
names are used as in the datasets supplied.</p></dd>
<dt id="arg-filename">filename<a class="anchor" aria-label="anchor" href="#arg-filename"></a></dt>
<dd><p>Where to write the result. Should end in .csf in order to be
compatible with CAKE.</p></dd>
<dt id="arg-path">path<a class="anchor" aria-label="anchor" href="#arg-path"></a></dt>
<dd><p>An optional path to the output file.</p></dd>
<dt id="arg-overwrite">overwrite<a class="anchor" aria-label="anchor" href="#arg-overwrite"></a></dt>
<dd><p>If TRUE, existing files are overwritten.</p></dd>
<dt id="arg-study">study<a class="anchor" aria-label="anchor" href="#arg-study"></a></dt>
<dd><p>The name of the study.</p></dd>
<dt id="arg-description">description<a class="anchor" aria-label="anchor" href="#arg-description"></a></dt>
<dd><p>An optional description.</p></dd>
<dt id="arg-time-unit">time_unit<a class="anchor" aria-label="anchor" href="#arg-time-unit"></a></dt>
<dd><p>The time unit for the residue data.</p></dd>
<dt id="arg-res-unit">res_unit<a class="anchor" aria-label="anchor" href="#arg-res-unit"></a></dt>
<dd><p>The unit used for the residues.</p></dd>
<dt id="arg-comment">comment<a class="anchor" aria-label="anchor" href="#arg-comment"></a></dt>
<dd><p>An optional comment.</p></dd>
<dt id="arg-date">date<a class="anchor" aria-label="anchor" href="#arg-date"></a></dt>
<dd><p>The date of file creation.</p></dd>
<dt id="arg-optimiser">optimiser<a class="anchor" aria-label="anchor" href="#arg-optimiser"></a></dt>
<dd><p>Can be OLS or IRLS.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>The function is called for its side effect.</p>
</div>
<div class="section level2">
<h2 id="author">Author<a class="anchor" aria-label="anchor" href="#author"></a></h2>
<p>Johannes Ranke</p>
</div>
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